RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 TMEM192Q8IY95 271 aa17.89■□□□□ 0.45
MCF2L-228ENST00000487354 NSUN3Q9H649 340 aaKnown RBP17.89■□□□□ 0.45
MCF2L-228ENST00000487354 KAT14Q9H8E8 782 aa17.89■□□□□ 0.45
MCF2L-228ENST00000487354 RC3H2Q9HBD1 1191 aaKnown RBP17.89■□□□□ 0.45
MCF2L-228ENST00000487354 VAT1LQ9HCJ6 419 aa17.89■□□□□ 0.45
MCF2L-228ENST00000487354 CTNNA3Q9UI47 895 aa17.89■□□□□ 0.45
MCF2L-228ENST00000487354 TELO2Q9Y4R8 837 aa17.89■□□□□ 0.45
MCF2L-228ENST00000487354 TTC3P53804 2025 aa17.89■□□□□ 0.45
MCF2L-228ENST00000487354 KMT2EQ8IZD2 1858 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 USP34Q70CQ2 3546 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 C17orf102A2RUQ5 167 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 LGALS2P05162 132 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 CTSHP09668 335 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 PARP1P09874 1014 aaKnown RBP17.88■□□□□ 0.45
MCF2L-228ENST00000487354 MYCLP12524 364 aaPredicted RBP17.88■□□□□ 0.45
MCF2L-228ENST00000487354 HOXA13P31271 388 aaPredicted RBP17.88■□□□□ 0.45
MCF2L-228ENST00000487354 CTC1Q2NKJ3 1217 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 ATP6V0A1Q93050 837 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 FBXL18Q96ME1 805 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 YME1L1Q96TA2 773 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 AMNQ9BXJ7 453 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 RNPEPQ9H4A4 650 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 ZSWIM5Q9P217 1185 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 LOXHD1Q8IVV2 1947 aa17.88■□□□□ 0.45
MCF2L-228ENST00000487354 NT5C2P49902 561 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 ADAM17P78536 824 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 DLX2Q07687 328 aaPredicted RBP17.87■□□□□ 0.45
MCF2L-228ENST00000487354 SEMA3FQ13275 785 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 RPAINQ86UA6 219 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 IQCA1Q86XH1 822 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 ADHFE1Q8IWW8 467 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 SEPT8Q92599 483 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 UIMC1Q96RL1 719 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 PRKAG3Q9UGI9 489 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 FRMPD4Q14CM0 1322 aa17.87■□□□□ 0.45
MCF2L-228ENST00000487354 C5orf67F2Z3F1 127 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 H3BRB1 525 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 ZNF213O14771 459 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 CAND2O75155 1236 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 UPP2O95045 317 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 SDSP20132 328 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 IRS1P35568 1242 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 SEC23AQ15436 765 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 CCDC178Q5BJE1 867 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 KCNV1Q6PIU1 500 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 HFE2Q6ZVN8 426 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 TUT1Q9H6E5 874 aaKnown RBP17.86■□□□□ 0.45
MCF2L-228ENST00000487354 MAD2L2Q9UI95 211 aa17.86■□□□□ 0.45
MCF2L-228ENST00000487354 ZBTB5O15062 677 aa17.85■□□□□ 0.45
MCF2L-228ENST00000487354 DHX16O60231 1041 aaKnown RBP17.85■□□□□ 0.45
MCF2L-228ENST00000487354 TGFB3P10600 412 aa17.85■□□□□ 0.45
MCF2L-228ENST00000487354 MRPS9P82933 396 aaKnown RBP17.85■□□□□ 0.45
MCF2L-228ENST00000487354 HYAL1Q12794 435 aa17.85■□□□□ 0.45
MCF2L-228ENST00000487354 HDAC1Q13547 482 aaPredicted RBP17.85■□□□□ 0.45
MCF2L-228ENST00000487354 FAM26DQ5JW98 314 aa17.85■□□□□ 0.45
MCF2L-228ENST00000487354 TRIM50Q86XT4 487 aa17.85■□□□□ 0.45
MCF2L-228ENST00000487354 IFIH1Q9BYX4 1025 aaKnown RBP17.85■□□□□ 0.45
MCF2L-228ENST00000487354 CLDND1Q9NY35 253 aa17.85■□□□□ 0.45
MCF2L-228ENST00000487354 MAP3K20Q9NYL2 800 aaKnown RBP17.85■□□□□ 0.45
MCF2L-228ENST00000487354 SUPT16HQ9Y5B9 1047 aaKnown RBP17.85■□□□□ 0.45
MCF2L-228ENST00000487354 PLXNA4Q9HCM2 1894 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 PALM3A6NDB9 673 aaPredicted RBP17.84■□□□□ 0.45
MCF2L-228ENST00000487354 GRM6O15303 877 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 TBX10O75333 385 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 SMAD2Q15796 467 aaKnown RBP17.84■□□□□ 0.45
MCF2L-228ENST00000487354 GPR20Q99678 358 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 KCNH6Q9H252 994 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 IL25Q9H293 177 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 SETD4Q9NVD3 440 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 PCDHA1Q9Y5I3 950 aa17.84■□□□□ 0.45
MCF2L-228ENST00000487354 TRIM6-TRIM34B2RNG4 842 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 KLRF2D3W0D1 207 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 CCND2P30279 289 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 GTF2F1P35269 517 aaKnown RBP eCLIP17.83■□□□□ 0.44
MCF2L-228ENST00000487354 CAMK1Q14012 370 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 CSPP1Q1MSJ5 1256 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 LMBR1Q8WVP7 490 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 RILPL2Q969X0 211 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 INPP4AQ96PE3 977 aaPredicted RBP17.83■□□□□ 0.44
MCF2L-228ENST00000487354 LNPKQ9C0E8 428 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 MLXIPQ9HAP2 919 aa17.83■□□□□ 0.44
MCF2L-228ENST00000487354 ADGRA3Q8IWK6 1321 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 MBTPS2O43462 519 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 CYTH3O43739 400 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 CHRNA1P02708 482 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 ICAM3P32942 547 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 CTNNB1P35222 781 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 MFAP1P55081 439 aaKnown RBP17.82■□□□□ 0.44
MCF2L-228ENST00000487354 MGAT3Q09327 533 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 CLUL1Q15846 466 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 METTL7BQ6UX53 244 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 CYB5R4Q7L1T6 521 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 SAMD3Q8N6K7 520 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 APBB2Q92870 758 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 CLP1Q92989 425 aaKnown RBP17.82■□□□□ 0.44
MCF2L-228ENST00000487354 EHMT1Q9H9B1 1298 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 MUTYHQ9UIF7 546 aa17.82■□□□□ 0.44
MCF2L-228ENST00000487354 SPATA31C2B4DYI2 1134 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 LINC01565O15544 149 aa17.81■□□□□ 0.44
MCF2L-228ENST00000487354 BMPR1AP36894 532 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms