RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 NKX2-4Q9H2Z4 354 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 NOD1Q9Y239 953 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 UBIAD1Q9Y5Z9 338 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 SLC4A7Q9Y6M7 1214 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 STXBP3O00186 592 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 ADAMTS3O15072 1205 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 LRRC8DQ7L1W4 858 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 RETREG2Q8NC44 543 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 MAFAQ8NHW3 353 aaPredicted RBP16.21■□□□□ 0.19
UPF3A-204ENST00000475218 SENP7Q9BQF6 1050 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 RBM28Q9NW13 759 aaKnown RBP16.21■□□□□ 0.19
UPF3A-204ENST00000475218 PCDHA6Q9UN73 950 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 PCDHA8Q9Y5H6 950 aa16.21■□□□□ 0.19
UPF3A-204ENST00000475218 V9GY48 417 aaPredicted RBP16.21■□□□□ 0.19
UPF3A-204ENST00000475218 GOLGA8AA7E2F4 631 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 GOLGA8BA8MQT2 603 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 H3BRB1 525 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 ARHGEF15O94989 841 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 FOSL2P15408 326 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 SELPP16109 830 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 ADD1P35611 737 aaKnown RBP16.21■□□□□ 0.18
UPF3A-204ENST00000475218 APOBRQ0VD83 1088 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 PTK7Q13308 1070 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 NEDD9Q14511 834 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 SYNE3Q6ZMZ3 975 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 SERINC5Q86VE9 423 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 USP38Q8NB14 1042 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 JAKMIP1Q96N16 626 aaKnown RBP16.21■□□□□ 0.18
UPF3A-204ENST00000475218 AGXT2Q9BYV1 514 aa16.21■□□□□ 0.18
UPF3A-204ENST00000475218 MTIF3Q9H2K0 278 aaKnown RBP16.21■□□□□ 0.18
UPF3A-204ENST00000475218 TUT1Q9H6E5 874 aaKnown RBP16.21■□□□□ 0.18
UPF3A-204ENST00000475218 NID2Q14112 1375 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 ZBBXA8MT70 800 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 CXCL10P02778 98 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 SMIM10L2AP0DMW4 78 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 SMIM10L2BP0DMW5 78 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 ATP2A2P16615 1042 aaKnown RBP16.2■□□□□ 0.18
UPF3A-204ENST00000475218 ADGRE1Q14246 886 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 RAB30Q15771 203 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 ZNF618Q5T7W0 954 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 Q6ZUG5 572 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 GPRASP2Q96D09 838 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 PGBD1Q96JS3 809 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 OSBPL7Q9BZF2 842 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 PRDM12Q9H4Q4 367 aa16.2■□□□□ 0.18
UPF3A-204ENST00000475218 SPTBN5Q9NRC6 3674 aaKnown RBP16.19■□□□□ 0.18
UPF3A-204ENST00000475218 HMGB1P09429 215 aaKnown RBP16.19■□□□□ 0.18
UPF3A-204ENST00000475218 RCAN1P53805 252 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 ADAM17P78536 824 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 FBXL16Q8N461 479 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 CYP2W1Q8TAV3 490 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 RNPEPQ9H4A4 650 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 RIC8AQ9NPQ8 531 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 PCDHA11Q9Y5I1 949 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 MYO9BQ13459 2157 aa16.19■□□□□ 0.18
UPF3A-204ENST00000475218 GSTTP1A0A1W2PQM5 241 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 TREHO43280 583 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 RPS6KB1P23443 525 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 CLK2P49760 499 aaKnown RBP16.18■□□□□ 0.18
UPF3A-204ENST00000475218 SP4Q02446 784 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.18■□□□□ 0.18
UPF3A-204ENST00000475218 CCDC155Q8N6L0 562 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 BRF1Q92994 677 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 FTOQ9C0B1 505 aaKnown RBP eCLIP16.18■□□□□ 0.18
UPF3A-204ENST00000475218 TMEM260Q9NX78 707 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 BARHL2Q9NY43 387 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 MSRAQ9UJ68 235 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 CUL9Q8IWT3 2517 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 NOP56O00567 594 aaKnown RBP16.18■□□□□ 0.18
UPF3A-204ENST00000475218 NAPAP54920 295 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 MKRN4PQ13434 485 aaPredicted RBP16.18■□□□□ 0.18
UPF3A-204ENST00000475218 PPP1R18Q6NYC8 613 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 TMCO2Q7Z6W1 182 aaPredicted RBP16.18■□□□□ 0.18
UPF3A-204ENST00000475218 NLRX1Q86UT6 975 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 USP26Q9BXU7 913 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 JADE2Q9NQC1 790 aa16.18■□□□□ 0.18
UPF3A-204ENST00000475218 PKN1Q16512 942 aa16.17■□□□□ 0.18
UPF3A-204ENST00000475218 BLOC1S2Q6QNY1 142 aa16.17■□□□□ 0.18
UPF3A-204ENST00000475218 SPRED2Q7Z698 418 aa16.17■□□□□ 0.18
UPF3A-204ENST00000475218 SETD4Q9NVD3 440 aa16.17■□□□□ 0.18
UPF3A-204ENST00000475218 XIRP2A4UGR9 3374 aa16.17■□□□□ 0.18
UPF3A-204ENST00000475218 C17orf102A2RUQ5 167 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 SPDYE3A6NKU9 549 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 BAIAP3O94812 1187 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 CA3P07451 260 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 ACTN1P12814 892 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 TCF7P36402 384 aaPredicted RBP16.16■□□□□ 0.18
UPF3A-204ENST00000475218 WDR5P61964 334 aaKnown RBP16.16■□□□□ 0.18
UPF3A-204ENST00000475218 DEFB103AP81534 67 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 MTMR1Q13613 665 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 NTRK3Q16288 839 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 UTP14CQ5TAP6 766 aaKnown RBP16.16■□□□□ 0.18
UPF3A-204ENST00000475218 HERC6Q8IVU3 1022 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 ATP6V0A1Q93050 837 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 SLC9A7Q96T83 725 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 SLC28A3Q9HAS3 691 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 PKD2L1Q9P0L9 805 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 GTF3C3Q9Y5Q9 886 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 SIP14410 1827 aa16.16■□□□□ 0.18
UPF3A-204ENST00000475218 SMCO2A6NFE2 343 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms