RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 RABGGTBP53611 331 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 GRIN2CQ14957 1233 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 TRIM71Q2Q1W2 868 aaKnown RBP12.5□□□□□ -0.41
SF3A1-203ENST00000444440 SYNE3Q6ZMZ3 975 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 BRF1Q92994 677 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 CUL5Q93034 780 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 GPR20Q99678 358 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 AGXT2Q9BYV1 514 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 OSBPL7Q9BZF2 842 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 MLXIPQ9HAP2 919 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 TMEM260Q9NX78 707 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 PCDHA6Q9UN73 950 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 PCDHA8Q9Y5H6 950 aa12.5□□□□□ -0.41
SF3A1-203ENST00000444440 V9GY48 417 aaPredicted RBP12.5□□□□□ -0.41
SF3A1-203ENST00000444440 KIAA1671Q9BY89 1806 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 PPFIA3O75145 1194 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 PPFIA4O75335 1185 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 STAM2O75886 525 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 HOXC8P31273 242 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 SP4Q02446 784 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 MBTPS1Q14703 1052 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 GNPTABQ3T906 1256 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 BLOC1S2Q6QNY1 142 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 METTL7BQ6UX53 244 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 C7orf31Q8N865 590 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 CYP2W1Q8TAV3 490 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 TIFAQ96CG3 184 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 NAP1L2Q9ULW6 460 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-203ENST00000444440 UBIAD1Q9Y5Z9 338 aa12.49□□□□□ -0.41
SF3A1-203ENST00000444440 NBNO60934 754 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 HMGB1P09429 215 aaKnown RBP12.48□□□□□ -0.41
SF3A1-203ENST00000444440 CKBP12277 381 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 CLK2P49760 499 aaKnown RBP12.48□□□□□ -0.41
SF3A1-203ENST00000444440 METAP2P50579 478 aaKnown RBP eCLIP12.48□□□□□ -0.413e-6■■■■□ 25.7
SF3A1-203ENST00000444440 NAPAP54920 295 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 RBL2Q08999 1139 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 BFSP2Q13515 415 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 TOB2Q14106 344 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-203ENST00000444440 NTRK3Q16288 839 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 PKN1Q16512 942 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 LARP6Q9BRS8 491 aaKnown RBP12.48□□□□□ -0.41
SF3A1-203ENST00000444440 KATNAL1Q9BW62 490 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 USP26Q9BXU7 913 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 NKX2-4Q9H2Z4 354 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 ZNF576Q9H609 170 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 RIC8AQ9NPQ8 531 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 BARHL2Q9NY43 387 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 PKD2L1Q9P0L9 805 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 NOD1Q9Y239 953 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 MUC3AQ02505 3323 aa12.48□□□□□ -0.41
SF3A1-203ENST00000444440 ZBBXA8MT70 800 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 H3BRB1 525 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 ARHGEF15O94989 841 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 SMIM10L2AP0DMW4 78 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 SMIM10L2BP0DMW5 78 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 RCAN1P53805 252 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 PTK7Q13308 1070 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 NEDD9Q14511 834 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 PFKFB3Q16875 520 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-203ENST00000444440 ZNF618Q5T7W0 954 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 UTP14CQ5TAP6 766 aaKnown RBP12.47□□□□□ -0.41
SF3A1-203ENST00000444440 LRRC8DQ7L1W4 858 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 TMCO2Q7Z6W1 182 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-203ENST00000444440 RPUSD2Q8IZ73 545 aaKnown RBP12.47□□□□□ -0.41
SF3A1-203ENST00000444440 FBXL16Q8N461 479 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 CAGE1Q8TC20 777 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 AFAP1L1Q8TED9 768 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 PHKBQ93100 1093 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 GPRASP2Q96D09 838 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 SENP7Q9BQF6 1050 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 ANO3Q9BYT9 981 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 TUT1Q9H6E5 874 aaKnown RBP12.47□□□□□ -0.41
SF3A1-203ENST00000444440 NCOA5Q9HCD5 579 aaKnown RBP12.47□□□□□ -0.41
SF3A1-203ENST00000444440 JADE2Q9NQC1 790 aa12.47□□□□□ -0.41
SF3A1-203ENST00000444440 RALGAPA2Q2PPJ7 1873 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 TMEM265A0A087WTH1 108 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 GSTTP1A0A1W2PQM5 241 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SMCO2A6NFE2 343 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SPDYE3A6NKU9 549 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 NOP56O00567 594 aaKnown RBP12.46□□□□□ -0.41
SF3A1-203ENST00000444440 TREHO43280 583 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 REC8O95072 547 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 PFKMP08237 780 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 ARP10275 920 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SELPP16109 830 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 RFC2P35250 354 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 ADCY7P51828 1080 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 PPP1R18Q6NYC8 613 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 XRRA1Q6P2D8 792 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SPRED2Q7Z698 418 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SERINC5Q86VE9 423 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 RETREG2Q8NC44 543 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SLC17A8Q8NDX2 589 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 RNPEPQ9H4A4 650 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 ZSWIM6Q9HCJ5 1215 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 SLC4A7Q9Y6M7 1214 aa12.46□□□□□ -0.41
SF3A1-203ENST00000444440 EDIL3O43854 480 aa12.45□□□□□ -0.42
SF3A1-203ENST00000444440 DTNBO60941 627 aa12.45□□□□□ -0.42
SF3A1-203ENST00000444440 CXCL10P02778 98 aa12.45□□□□□ -0.42
SF3A1-203ENST00000444440 SCG2P13521 617 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms