RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SMIM10L2AP0DMW4 78 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 SMIM10L2BP0DMW5 78 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 TGFB3P10600 412 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 RXRAP19793 462 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 KIF5BP33176 963 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 KCNQ1P51787 676 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 AAK1Q2M2I8 961 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 CYFIP1Q7L576 1253 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 TRIM50Q86XT4 487 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 MYOCDQ8IZQ8 938 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 C16orf70Q9BSU1 422 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 TUT1Q9H6E5 874 aaKnown RBP16.74■□□□□ 0.27
SDC1-204ENST00000429035 BCAS3Q9H6U6 928 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 LY9Q9HBG7 655 aa16.74■□□□□ 0.27
SDC1-204ENST00000429035 NLRC5Q86WI3 1866 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 FRMPD4Q14CM0 1322 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 EMSYQ7Z589 1322 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 RSPH10B2B2RC85 870 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 FIBPO43427 364 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 GJB5O95377 273 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 PLEKHA8P1O95397 391 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 RSPH10BP0C881 870 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 MRPS9P82933 396 aaKnown RBP16.73■□□□□ 0.27
SDC1-204ENST00000429035 NEDD9Q14511 834 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 MBTPS1Q14703 1052 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 TRAF7Q6Q0C0 670 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 USP17L6PQ6QN14 398 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 SERINC5Q86VE9 423 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 IGDCC4Q8TDY8 1250 aa16.73■□□□□ 0.27
SDC1-204ENST00000429035 NCOR1O75376 2440 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 TREHO43280 583 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 STAM2O75886 525 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 AMHP03971 560 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 SEMA3FQ13275 785 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 METTL7BQ6UX53 244 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.72■□□□□ 0.272e-7■□□□□ 9
SDC1-204ENST00000429035 CMTR1Q8N1G2 835 aaKnown RBP16.72■□□□□ 0.27
SDC1-204ENST00000429035 DBF4BQ8NFT6 615 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 MAP4K1Q92918 833 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 INPP4AQ96PE3 977 aaPredicted RBP16.72■□□□□ 0.27
SDC1-204ENST00000429035 RAD9AQ99638 391 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 SPZ1Q9BXG8 430 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 ZNF215Q9UL58 517 aaPredicted RBP16.72■□□□□ 0.27
SDC1-204ENST00000429035 REV3LO60673 3130 aa16.72■□□□□ 0.27
SDC1-204ENST00000429035 SH2B2O14492 632 aaPredicted RBP16.71■□□□□ 0.27
SDC1-204ENST00000429035 ICAM3P32942 547 aa16.71■□□□□ 0.27
SDC1-204ENST00000429035 ARHGAP4P98171 946 aa16.71■□□□□ 0.27
SDC1-204ENST00000429035 TGS1Q96RS0 853 aaKnown RBP16.71■□□□□ 0.27
SDC1-204ENST00000429035 GPR20Q99678 358 aa16.71■□□□□ 0.27
SDC1-204ENST00000429035 LRRC2Q9BYS8 371 aa16.71■□□□□ 0.27
SDC1-204ENST00000429035 PKD2L1Q9P0L9 805 aa16.71■□□□□ 0.27
SDC1-204ENST00000429035 BRWD1Q9NSI6 2320 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 hCG_1642624A0A1W2PR95 340 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 LINC01553A4QN01 128 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 SPATA31C2B4DYI2 1134 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 LPXNO60711 386 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 GNAT1P11488 350 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 POU3F3P20264 500 aaPredicted RBP16.7■□□□□ 0.26
SDC1-204ENST00000429035 MCM5P33992 734 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 GNAQP50148 359 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 UBE2SQ16763 222 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 PCNX4Q63HM2 1172 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 NLRX1Q86UT6 975 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 MICU3Q86XE3 530 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 CCDC82Q8N4S0 544 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 USP26Q9BXU7 913 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 RNPEPQ9H4A4 650 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 ANO2Q9NQ90 1003 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 SETD4Q9NVD3 440 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 COG5Q9UP83 839 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 TELO2Q9Y4R8 837 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 MUC3AQ02505 3323 aa16.7■□□□□ 0.26
SDC1-204ENST00000429035 SLC27A2O14975 620 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 UPP2O95045 317 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 MARK3P27448 753 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 SRBD1Q8N5C6 995 aaKnown RBP16.69■□□□□ 0.26
SDC1-204ENST00000429035 SEPT8Q92599 483 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 HLA-CQ95604 372 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 TMEM87BQ96K49 555 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 YME1L1Q96TA2 773 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 MAP3K14Q99558 947 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 LZTS2Q9BRK4 669 aa16.69■□□□□ 0.26
SDC1-204ENST00000429035 LSG1Q9H089 658 aaKnown RBP16.69■□□□□ 0.26
SDC1-204ENST00000429035 TRANK1O15050 2925 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 MEIS2O14770 477 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 BMP1P13497 986 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 COL9A1P20849 921 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 ERVK-21P61565 698 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 PLEKHG4Q58EX7 1191 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 HEATR3Q7Z4Q2 680 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 FBXO22Q8NEZ5 403 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 C17orf80Q9BSJ5 609 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 ESYT1Q9BSJ8 1104 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 SUGCTQ9HAC7 445 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 INSL6Q9Y581 213 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 SLC12A7Q9Y666 1083 aa16.68■□□□□ 0.26
SDC1-204ENST00000429035 RALGAPA2Q2PPJ7 1873 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 SPDYE3A6NKU9 549 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 CALM1P0DP23 149 aa16.67■□□□□ 0.26
SDC1-204ENST00000429035 CALM2P0DP24 149 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms