RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W MUM2P38236 366 aa13.47□□□□□ -0.25
DEP1YAL013W YHR033WP38690 423 aa13.47□□□□□ -0.25
DEP1YAL013W VHR1P40522 640 aa13.47□□□□□ -0.25
DEP1YAL013W PRM10P42946 383 aa13.47□□□□□ -0.25
DEP1YAL013W AGP3P43548 558 aa13.47□□□□□ -0.25
DEP1YAL013W DSL1P53847 754 aa13.47□□□□□ -0.25
DEP1YAL013W NTO1Q12311 748 aa13.47□□□□□ -0.25
DEP1YAL013W MST1P07236 462 aa13.46□□□□□ -0.25
DEP1YAL013W ALG7P07286 448 aa13.46□□□□□ -0.25
DEP1YAL013W CMP2P14747 604 aa13.46□□□□□ -0.25
DEP1YAL013W CMK2P22517 447 aa13.46□□□□□ -0.25
DEP1YAL013W RNQ1P25367 405 aa13.46□□□□□ -0.25
DEP1YAL013W CDC5P32562 705 aa13.46□□□□□ -0.25
DEP1YAL013W SFC1P33303 322 aa13.46□□□□□ -0.25
DEP1YAL013W MNN9P39107 395 aaKnown RBP13.46□□□□□ -0.25
DEP1YAL013W MAD2P40958 196 aa13.46□□□□□ -0.25
DEP1YAL013W YJL049WP47048 450 aa13.46□□□□□ -0.25
DEP1YAL013W HXT16P47185 567 aa13.46□□□□□ -0.25
DEP1YAL013W ASI2P53895 289 aa13.46□□□□□ -0.25
DEP1YAL013W HXT15P54854 567 aa13.46□□□□□ -0.25
DEP1YAL013W SPR6Q01684 191 aa13.46□□□□□ -0.25
DEP1YAL013W YPL071CQ02864 156 aa13.46□□□□□ -0.25
DEP1YAL013W THI73Q07904 523 aa13.46□□□□□ -0.25
DEP1YAL013W RED1P14291 827 aa13.45□□□□□ -0.26
DEP1YAL013W TRM1P15565 570 aaKnown RBP13.45□□□□□ -0.26
DEP1YAL013W TYR1P20049 452 aa13.45□□□□□ -0.26
DEP1YAL013W IDH2P28241 369 aaKnown RBP13.45□□□□□ -0.26
DEP1YAL013W PET127P32606 800 aa13.45□□□□□ -0.26
DEP1YAL013W LRO1P40345 661 aa13.45□□□□□ -0.26
DEP1YAL013W PMT4P46971 762 aa13.45□□□□□ -0.26
DEP1YAL013W CIS3P47001 227 aa13.45□□□□□ -0.26
DEP1YAL013W YJL043WP47053 257 aa13.45□□□□□ -0.26
DEP1YAL013W SDT1P53078 280 aa13.45□□□□□ -0.26
DEP1YAL013W YNR068CP53754 272 aa13.45□□□□□ -0.26
DEP1YAL013W IGO1P53897 168 aa13.45□□□□□ -0.26
DEP1YAL013W GPI11Q06636 219 aa13.45□□□□□ -0.26
DEP1YAL013W REX4Q08237 289 aa13.45□□□□□ -0.26
DEP1YAL013W RPN8Q08723 338 aaKnown RBP13.45□□□□□ -0.26
DEP1YAL013W PSY3Q12318 242 aa13.45□□□□□ -0.26
DEP1YAL013W BUB3P26449 341 aa13.44□□□□□ -0.26
DEP1YAL013W CTS1P29029 562 aa13.44□□□□□ -0.26
DEP1YAL013W FMP46P36141 133 aaKnown RBP13.44□□□□□ -0.26
DEP1YAL013W ARA1P38115 344 aa13.44□□□□□ -0.26
DEP1YAL013W RCK1P38622 512 aa13.44□□□□□ -0.26
DEP1YAL013W ATP22P50273 684 aaPredicted RBP13.44□□□□□ -0.26
DEP1YAL013W RMR1P53060 241 aa13.44□□□□□ -0.26
DEP1YAL013W RTS3P53289 263 aa13.44□□□□□ -0.26
DEP1YAL013W SUN4P53616 420 aa13.44□□□□□ -0.26
DEP1YAL013W SKI8Q02793 397 aaPredicted RBP13.44□□□□□ -0.26
DEP1YAL013W PEX12Q04370 399 aa13.44□□□□□ -0.26
DEP1YAL013W YOR342CQ12182 319 aa13.44□□□□□ -0.26
DEP1YAL013W YOL107WQ12239 342 aa13.44□□□□□ -0.26
DEP1YAL013W HTA1P04911 132 aaKnown RBP13.43□□□□□ -0.26
DEP1YAL013W RAD7P06779 565 aa13.43□□□□□ -0.26
DEP1YAL013W GAL7P08431 366 aa13.43□□□□□ -0.26
DEP1YAL013W GAL3P13045 520 aa13.43□□□□□ -0.26
DEP1YAL013W DMC1P25453 334 aa13.43□□□□□ -0.26
DEP1YAL013W CDC13P32797 924 aaKnown RBP13.43□□□□□ -0.26
DEP1YAL013W ASC1P38011 319 aaKnown RBP13.43□□□□□ -0.26
DEP1YAL013W RIB1P38066 345 aa13.43□□□□□ -0.26
DEP1YAL013W STP2P38704 541 aa13.43□□□□□ -0.26
DEP1YAL013W CEM1P39525 442 aa13.43□□□□□ -0.26
DEP1YAL013W SNL1P40548 159 aa13.43□□□□□ -0.26
DEP1YAL013W EGD1Q02642 157 aaKnown RBP13.43□□□□□ -0.26
DEP1YAL013W COS7Q07788 383 aa13.43□□□□□ -0.26
DEP1YAL013W PFK27Q12471 397 aaPredicted RBP13.43□□□□□ -0.26
DEP1YAL013W SNF4P12904 322 aa13.42□□□□□ -0.26
DEP1YAL013W DOM34P33309 386 aa13.42□□□□□ -0.26
DEP1YAL013W SLM4P38247 162 aa13.42□□□□□ -0.26
DEP1YAL013W LYS1P38998 373 aaRIP-Chip data13.42□□□□□ -0.26 RIP-Chip
DEP1YAL013W MRK1P50873 501 aa13.42□□□□□ -0.26
DEP1YAL013W YGR250CP53316 781 aaKnown RBP13.42□□□□□ -0.26
DEP1YAL013W PDR8Q06149 701 aa13.42□□□□□ -0.26
DEP1YAL013W PUN1Q06991 263 aa13.42□□□□□ -0.26
DEP1YAL013W XYL2Q07993 356 aa13.42□□□□□ -0.26
DEP1YAL013W RRP40Q08285 240 aaKnown RBP13.42□□□□□ -0.26
DEP1YAL013W DIN7Q12086 430 aa13.42□□□□□ -0.26
DEP1YAL013W WTM1Q12363 437 aaKnown RBP13.42□□□□□ -0.26
DEP1YAL013W PEX3P28795 441 aa13.41□□□□□ -0.26
DEP1YAL013W ERG1P32476 496 aaKnown RBP13.41□□□□□ -0.26
DEP1YAL013W SKN1P33336 771 aa13.41□□□□□ -0.26
DEP1YAL013W SWH1P35845 1188 aa13.41□□□□□ -0.26
DEP1YAL013W MNN2P38069 597 aa13.41□□□□□ -0.26
DEP1YAL013W MAP2P38174 421 aaKnown RBP13.41□□□□□ -0.26
DEP1YAL013W YHL012WP38709 493 aa13.41□□□□□ -0.26
DEP1YAL013W YHR112CP38716 378 aa13.41□□□□□ -0.26
DEP1YAL013W RBG1P39729 369 aa13.41□□□□□ -0.26
DEP1YAL013W RIC1P40395 1056 aa13.41□□□□□ -0.26
DEP1YAL013W FHN1P53279 174 aa13.41□□□□□ -0.26
DEP1YAL013W THP1Q08231 455 aa13.41□□□□□ -0.26
DEP1YAL013W PUS9Q12069 462 aa13.41□□□□□ -0.26
DEP1YAL013W YPR064WQ12492 139 aa13.41□□□□□ -0.26
DEP1YAL013W MHF2Q3E829 80 aa13.41□□□□□ -0.26
DEP1YAL013W RPP1BP10622 106 aaKnown RBP13.4□□□□□ -0.26
DEP1YAL013W YCL049CP25577 312 aa13.4□□□□□ -0.26
DEP1YAL013W ARP2P32381 391 aaKnown RBP13.4□□□□□ -0.26
DEP1YAL013W RAD17P48581 401 aa13.4□□□□□ -0.26
DEP1YAL013W ARE2P53629 642 aaKnown RBP13.4□□□□□ -0.26
DEP1YAL013W YDR239CQ03780 787 aa13.4□□□□□ -0.26
DEP1YAL013W YML096WQ04489 525 aa13.4□□□□□ -0.26
Retrieved 100 of 5,963 RNA–protein pairs in 18 ms