RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 SPZ1Q9BXG8 430 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 NKX2-4Q9H2Z4 354 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 MLXIPQ9HAP2 919 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 MAP3K20Q9NYL2 800 aaKnown RBP11.88□□□□□ -0.51
SCN1A-222ENST00000642141 NAP1L2Q9ULW6 460 aaPredicted RBP11.88□□□□□ -0.51
SCN1A-222ENST00000642141 YBX2Q9Y2T7 364 aaKnown RBP11.88□□□□□ -0.51
SCN1A-222ENST00000642141 TELO2Q9Y4R8 837 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 SLC4A7Q9Y6M7 1214 aa11.88□□□□□ -0.51
SCN1A-222ENST00000642141 CDC45O75419 566 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 UBA1P22314 1058 aaKnown RBP11.87□□□□□ -0.51
SCN1A-222ENST00000642141 LIFRP42702 1097 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 UBE2SQ16763 222 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 ADCK5Q3MIX3 580 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 RNF20Q5VTR2 975 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 HEATR3Q7Z4Q2 680 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 FANCBQ8NB91 859 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 CUL5Q93034 780 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 EMID1Q96A84 441 aaPredicted RBP11.87□□□□□ -0.51
SCN1A-222ENST00000642141 NEK1Q96PY6 1258 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 MAP3K14Q99558 947 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 LZTS2Q9BRK4 669 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 MTIF3Q9H2K0 278 aaKnown RBP11.87□□□□□ -0.51
SCN1A-222ENST00000642141 PRDM12Q9H4Q4 367 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 MSRAQ9UJ68 235 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 BRPF3Q9ULD4 1205 aa11.87□□□□□ -0.51
SCN1A-222ENST00000642141 MEIS2O14770 477 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 ATP2A2P16615 1042 aaKnown RBP11.86□□□□□ -0.51
SCN1A-222ENST00000642141 GNAQP50148 359 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 PTPN11Q06124 597 aaPredicted RBP11.86□□□□□ -0.51
SCN1A-222ENST00000642141 BFSP2Q13515 415 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 HIC1Q14526 733 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 SYNE3Q6ZMZ3 975 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 CYFIP1Q7L576 1253 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 DHX38Q92620 1227 aaKnown RBP11.86□□□□□ -0.51
SCN1A-222ENST00000642141 PSTPIP2Q9H939 334 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 PKD2L1Q9P0L9 805 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 GTF2IRD1Q9UHL9 959 aa11.86□□□□□ -0.51
SCN1A-222ENST00000642141 SPATA31C2B4DYI2 1134 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 NOP56O00567 594 aaKnown RBP11.85□□□□□ -0.51
SCN1A-222ENST00000642141 PPFIA4O75335 1185 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 CALM1P0DP23 149 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 CALM2P0DP24 149 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 CALM3P0DP25 149 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 SEMA3FQ13275 785 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 CCDC85BQ15834 202 aaPredicted RBP11.85□□□□□ -0.51
SCN1A-222ENST00000642141 UTP14CQ5TAP6 766 aaKnown RBP11.85□□□□□ -0.51
SCN1A-222ENST00000642141 KCNV1Q6PIU1 500 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 TMTC3Q6ZXV5 915 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 TMCO2Q7Z6W1 182 aaPredicted RBP11.85□□□□□ -0.51
SCN1A-222ENST00000642141 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.85□□□□□ -0.51
SCN1A-222ENST00000642141 SAMD3Q8N6K7 520 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 WNT8BQ93098 351 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 CERS4Q9HA82 394 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 KIAA1217Q5T5P2 1943 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 SCN10AQ9Y5Y9 1956 aa11.85□□□□□ -0.51
SCN1A-222ENST00000642141 KLF18A0A0U1RQI7 1052 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 HAS3O00219 553 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 PITPNM1O00562 1244 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 F2P00734 622 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 TGFB3P10600 412 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 CKBP12277 381 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 SELPP16109 830 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 IGFBP4P22692 258 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 SMARCA1P28370 1054 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 FGD1P98174 961 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 EXOSC10Q01780 885 aaKnown RBP11.84□□□□□ -0.51
SCN1A-222ENST00000642141 GPNMBQ14956 572 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 RAB30Q15771 203 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 GNPTABQ3T906 1256 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 APOA5Q6Q788 366 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 DHX32Q7L7V1 743 aaKnown RBP11.84□□□□□ -0.51
SCN1A-222ENST00000642141 SESTD1Q86VW0 696 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 TRIM50Q86XT4 487 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 USP38Q8NB14 1042 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 INPP4AQ96PE3 977 aaPredicted RBP11.84□□□□□ -0.51
SCN1A-222ENST00000642141 C16orf70Q9BSU1 422 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 MTA3Q9BTC8 594 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 KATNAL1Q9BW62 490 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 SLC28A3Q9HAS3 691 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 V9GY48 417 aaPredicted RBP11.84□□□□□ -0.51
SCN1A-222ENST00000642141 CHD7Q9P2D1 2997 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 SCN5AQ14524 2016 aa11.84□□□□□ -0.51
SCN1A-222ENST00000642141 TMEM265A0A087WTH1 108 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 H3BRB1 525 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 PIK3CDO00329 1044 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 ZBTB43O43298 467 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 FIBPO43427 364 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 PPFIA3O75145 1194 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 LGALS2P05162 132 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 SMIM10L2AP0DMW4 78 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 SMIM10L2BP0DMW5 78 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 ACTN1P12814 892 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 RFC2P35250 354 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 THPOP40225 353 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 ADGRE1Q14246 886 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 RTN1Q16799 776 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 TCTN1Q2MV58 587 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 ZNF618Q5T7W0 954 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 PCNX4Q63HM2 1172 aa11.83□□□□□ -0.52
SCN1A-222ENST00000642141 PPP2R2DQ66LE6 453 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms