RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 PLEKHA8P1O95397 391 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 F2P00734 622 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 MYOGP15173 224 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 UBA1P22314 1058 aaKnown RBP16.09■□□□□ 0.17
LINC00339-211ENST00000641009 KIF5BP33176 963 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 RFC2P35250 354 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 MFSD10Q14728 455 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 NECTIN1Q15223 517 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 KCNV1Q6PIU1 500 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 CMTR1Q8N1G2 835 aaKnown RBP16.09■□□□□ 0.17
LINC00339-211ENST00000641009 C7orf31Q8N865 590 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 RRP36Q96EU6 259 aaKnown RBP16.09■□□□□ 0.17
LINC00339-211ENST00000641009 TMEM87BQ96K49 555 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 SPATA33Q96N06 139 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 MTA3Q9BTC8 594 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 LRRC2Q9BYS8 371 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 GTF2IRD1Q9UHL9 959 aa16.09■□□□□ 0.17
LINC00339-211ENST00000641009 FRMPD4Q14CM0 1322 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 CCDC69A6NI79 296 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 RBAK-RBAKDNI3L0D1 243 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 HOXD8P13378 290 aaPredicted RBP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 ATP2A2P16615 1042 aaKnown RBP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 MRPS9P82933 396 aaKnown RBP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 KIAA0753Q2KHM9 967 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 RAB11FIP4Q86YS3 637 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 SRBD1Q8N5C6 995 aaKnown RBP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 USP38Q8NB14 1042 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 DHX38Q92620 1227 aaKnown RBP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 KATNAL1Q9BW62 490 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 COL25A1Q9BXS0 654 aaPredicted RBP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 FTOQ9C0B1 505 aaKnown RBP eCLIP16.08■□□□□ 0.16
LINC00339-211ENST00000641009 BCAS3Q9H6U6 928 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 SLC28A3Q9HAS3 691 aa16.08■□□□□ 0.16
LINC00339-211ENST00000641009 HAS3O00219 553 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 TGFB3P10600 412 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 ACTN1P12814 892 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 BMP2KLQ5H9B9 411 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 USP17L6PQ6QN14 398 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 CENPQQ7L2Z9 268 aaPredicted RBP16.07■□□□□ 0.16
LINC00339-211ENST00000641009 CCDC155Q8N6L0 562 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 CAGE1Q8TC20 777 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 GAS2L1Q99501 681 aaPredicted RBP16.07■□□□□ 0.16
LINC00339-211ENST00000641009 SEC63Q9UGP8 760 aaKnown RBP16.07■□□□□ 0.16
LINC00339-211ENST00000641009 MICAL3Q7RTP6 2002 aa16.07■□□□□ 0.16
LINC00339-211ENST00000641009 PPFIA4O75335 1185 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 SMARCA1P28370 1054 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 LIFRP42702 1097 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 ZNF200P98182 395 aaPredicted RBP16.06■□□□□ 0.16
LINC00339-211ENST00000641009 TMTC2Q8N394 836 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 AFAP1L1Q8TED9 768 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 LZTS2Q9BRK4 669 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 MLXIPQ9HAP2 919 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 RTEL1Q9NZ71 1219 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 PCDHA11Q9Y5I1 949 aa16.06■□□□□ 0.16
LINC00339-211ENST00000641009 hCG_1642624A0A1W2PR95 340 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 MEIS2O14770 477 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 CKBP12277 381 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 GNAQP50148 359 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 SEMA3FQ13275 785 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 ADGRE1Q14246 886 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 HIC1Q14526 733 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 GPNMBQ14956 572 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 GNPTABQ3T906 1256 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 PPP2R2DQ66LE6 453 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 LRRC8DQ7L1W4 858 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 CCDC82Q8N4S0 544 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 SMARCC2Q8TAQ2 1214 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 WNT8BQ93098 351 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 INPP4AQ96PE3 977 aaPredicted RBP16.05■□□□□ 0.16
LINC00339-211ENST00000641009 C16orf70Q9BSU1 422 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 SLC12A7Q9Y666 1083 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 TTC28Q96AY4 2481 aa16.05■□□□□ 0.16
LINC00339-211ENST00000641009 PRRC2BQ5JSZ5 2229 aaKnown RBP16.04■□□□□ 0.16
LINC00339-211ENST00000641009 CALM1P0DP23 149 aa16.04■□□□□ 0.16
LINC00339-211ENST00000641009 CALM2P0DP24 149 aa16.04■□□□□ 0.16
LINC00339-211ENST00000641009 CALM3P0DP25 149 aa16.04■□□□□ 0.16
LINC00339-211ENST00000641009 SELPP16109 830 aa16.04■□□□□ 0.16
LINC00339-211ENST00000641009 PPM1EQ8WY54 764 aa16.04■□□□□ 0.16
LINC00339-211ENST00000641009 CUL5Q93034 780 aa16.04■□□□□ 0.16
LINC00339-211ENST00000641009 COL4A4P53420 1690 aaPredicted RBP16.04■□□□□ 0.16
LINC00339-211ENST00000641009 PIK3CDO00329 1044 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 STAM2O75886 525 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 IGFBP4P22692 258 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 ICAM3P32942 547 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 RBL2Q08999 1139 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 PTK7Q13308 1070 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 PCNX4Q63HM2 1172 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 CYFIP1Q7L576 1253 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 MICU3Q86XE3 530 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 FANCBQ8NB91 859 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 SLC9A7Q96T83 725 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 TELO2Q9Y4R8 837 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 SPATA31C2B4DYI2 1134 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 H3BRB1 525 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 NOP56O00567 594 aaKnown RBP16.03■□□□□ 0.16
LINC00339-211ENST00000641009 FIBPO43427 364 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 NBNO60934 754 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 LGALS2P05162 132 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 CA3P07451 260 aa16.03■□□□□ 0.16
LINC00339-211ENST00000641009 TRIM71Q2Q1W2 868 aaKnown RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms