RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 EMID1Q96A84 441 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-216ENST00000576241 SENP2Q9HC62 589 aa15.86■□□□□ 0.13
CCDC40-216ENST00000576241 DDX41Q9UJV9 622 aaKnown RBP15.86■□□□□ 0.13
CCDC40-216ENST00000576241 CCND2P30279 289 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 KIF5BP33176 963 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 PTGISQ16647 500 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 SLC35G1Q2M3R5 365 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 CASC1Q6TDU7 716 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 MB21D2Q8IYB1 491 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-216ENST00000576241 PPTC7Q8NI37 304 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 CTCFLQ8NI51 663 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-216ENST00000576241 UIMC1Q96RL1 719 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 KATNAL1Q9BW62 490 aa15.85■□□□□ 0.13
CCDC40-216ENST00000576241 SCN10AQ9Y5Y9 1956 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 GTPBP6O43824 516 aaPredicted RBP15.84■□□□□ 0.13
CCDC40-216ENST00000576241 DDAH1O94760 285 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 ATP2A2P16615 1042 aaKnown RBP15.84■□□□□ 0.13
CCDC40-216ENST00000576241 POU3F3P20264 500 aaPredicted RBP15.84■□□□□ 0.13
CCDC40-216ENST00000576241 ANTXR2P58335 489 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 PGM5Q15124 567 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 KRT40Q6A162 431 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 SESTD1Q86VW0 696 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 FCHSD1Q86WN1 690 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 C7orf31Q8N865 590 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 IGDCC4Q8TDY8 1250 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 PIBF1Q8WXW3 757 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 HLA-CQ95604 372 aa15.84■□□□□ 0.13
CCDC40-216ENST00000576241 FTOQ9C0B1 505 aaKnown RBP eCLIP15.84■□□□□ 0.13
CCDC40-216ENST00000576241 CYTH3O43739 400 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 IQCF3P0C7M6 154 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 GDF6Q6KF10 455 aaPredicted RBP15.83■□□□□ 0.12
CCDC40-216ENST00000576241 NFXL1Q6ZNB6 911 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 VSIG10LQ86VR7 867 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 ZNF654Q8IZM8 581 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 IL31RAQ8NI17 732 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 CAGE1Q8TC20 777 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 KAT2BQ92831 832 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 VWCEQ96DN2 955 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 RRP36Q96EU6 259 aaKnown RBP15.83■□□□□ 0.12
CCDC40-216ENST00000576241 FBXL18Q96ME1 805 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 SPATA33Q96N06 139 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 MAP3K14Q99558 947 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 LY9Q9HBG7 655 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 SEC63Q9UGP8 760 aaKnown RBP15.83■□□□□ 0.12
CCDC40-216ENST00000576241 PCDHA11Q9Y5I1 949 aa15.83■□□□□ 0.12
CCDC40-216ENST00000576241 MYH6P13533 1939 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 WDFY4Q6ZS81 3184 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 CCDC69A6NI79 296 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 PRC1O43663 620 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 RGS20O76081 388 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 GGPS1O95749 300 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 F2P00734 622 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 ZNF286BP0CG31 522 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 TGFB3P10600 412 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 MCM5P33992 734 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 PSEN2P49810 448 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 MFSD10Q14728 455 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 GNPTABQ3T906 1256 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 CELF3Q5SZQ8 465 aaKnown RBP15.82■□□□□ 0.12
CCDC40-216ENST00000576241 TMTC2Q8N394 836 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 AFAP1L1Q8TED9 768 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 ALG1Q9BT22 464 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 MTA3Q9BTC8 594 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 SPZ1Q9BXG8 430 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 GTF2IRD1Q9UHL9 959 aa15.82■□□□□ 0.12
CCDC40-216ENST00000576241 SORBS3O60504 671 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 PPFIA4O75335 1185 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 GNAQP50148 359 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 KIAA0753Q2KHM9 967 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 MYSM1Q5VVJ2 828 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 CUL5Q93034 780 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 TMEM87BQ96K49 555 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 LZTS2Q9BRK4 669 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 ESYT1Q9BSJ8 1104 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 MYL10Q9BUA6 226 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 LSG1Q9H089 658 aaKnown RBP15.81■□□□□ 0.12
CCDC40-216ENST00000576241 CERS4Q9HA82 394 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 MLXIPQ9HAP2 919 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 ANO2Q9NQ90 1003 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 BRWD1Q9NSI6 2320 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 HDAC6Q9UBN7 1215 aa15.81■□□□□ 0.12
CCDC40-216ENST00000576241 SLC27A2O14975 620 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 STAM2O75886 525 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 BAIAP3O94812 1187 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 SELPP16109 830 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 UBA1P22314 1058 aaKnown RBP15.8■□□□□ 0.12
CCDC40-216ENST00000576241 SMARCA1P28370 1054 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 HSDL1Q3SXM5 330 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 LRRC8DQ7L1W4 858 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 SMARCC2Q8TAQ2 1214 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 SLC9A7Q96T83 725 aa15.8■□□□□ 0.12
CCDC40-216ENST00000576241 FRMPD4Q14CM0 1322 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 KIAA1217Q5T5P2 1943 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 EPOPA6NHQ4 379 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 HAS3O00219 553 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 SH2B2O14492 632 aaPredicted RBP15.79■□□□□ 0.12
CCDC40-216ENST00000576241 PARNO95453 639 aaKnown RBP15.79■□□□□ 0.12
CCDC40-216ENST00000576241 CALM1P0DP23 149 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 CALM2P0DP24 149 aa15.79■□□□□ 0.12
CCDC40-216ENST00000576241 CALM3P0DP25 149 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms