RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 AMNQ9BXJ7 453 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 KRT23Q9C075 422 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CNNM2Q9H8M5 875 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 THEGQ9P2T0 379 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 HDAC6Q9UBN7 1215 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 GTF2IRD1Q9UHL9 959 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 CTNNA3Q9UI47 895 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 TELO2Q9Y4R8 837 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 MTCH2Q9Y6C9 303 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 WDR81Q562E7 1941 aa7.83□□□□□ -1.16
VPS53-213ENST00000572334 FRMPD4Q14CM0 1322 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 LCHNA4D1U4 455 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 B4DLN1 442 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 ZBTB5O15062 677 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 CKBP12277 381 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 CASTP20810 708 aaKnown RBP7.82□□□□□ -1.16
VPS53-213ENST00000572334 HOXA13P31271 388 aaPredicted RBP7.82□□□□□ -1.16
VPS53-213ENST00000572334 HOXC8P31273 242 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 PSEN2P49810 448 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 MRPL12P52815 198 aaKnown RBP7.82□□□□□ -1.16
VPS53-213ENST00000572334 WDR5P61964 334 aaKnown RBP7.82□□□□□ -1.16
VPS53-213ENST00000572334 DEFB103AP81534 67 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 SEMA3FQ13275 785 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 PGM5Q15124 567 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 BRDTQ58F21 947 aaPredicted RBP7.82□□□□□ -1.16
VPS53-213ENST00000572334 TMEM67Q5HYA8 995 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 ARHGEF16Q5VV41 709 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 HERC6Q8IVU3 1022 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 PPTC7Q8NI37 304 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 CAGE1Q8TC20 777 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 AFAP1L1Q8TED9 768 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 SYMPKQ92797 1274 aaKnown RBP7.82□□□□□ -1.16
VPS53-213ENST00000572334 PIGSQ96S52 555 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 SLC9A7Q96T83 725 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 UBAC1Q9BSL1 405 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 C16orf70Q9BSU1 422 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 OSBPL7Q9BZF2 842 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 CERS4Q9HA82 394 aa7.82□□□□□ -1.16
VPS53-213ENST00000572334 E7EWF7 191 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 TNFRSF10AO00220 468 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 SGSM2O43147 1006 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 DHX16O60231 1041 aaKnown RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 SORBS3O60504 671 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 BAIAP3O94812 1187 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 MYCLP12524 364 aaPredicted RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 BMP1P13497 986 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 SELPP16109 830 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 UBA1P22314 1058 aaKnown RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 CHMP4BP1P59074 171 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 MRPS9P82933 396 aaKnown RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 TFF2Q03403 129 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 BFSP2Q13515 415 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 LAMC2Q13753 1193 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 MFSD10Q14728 455 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 DGKDQ16760 1214 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 KIAA0753Q2KHM9 967 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 CELF3Q5SZQ8 465 aaKnown RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 ZNF618Q5T7W0 954 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 LRRC8DQ7L1W4 858 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 MB21D2Q8IYB1 491 aaPredicted RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 RETREG2Q8NC44 543 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 IGDCC4Q8TDY8 1250 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 NECAB3Q96P71 396 aaPredicted RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 ALG1Q9BT22 464 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 FTOQ9C0B1 505 aaKnown RBP eCLIP7.81□□□□□ -1.16
VPS53-213ENST00000572334 MAP3K20Q9NYL2 800 aaKnown RBP7.81□□□□□ -1.16
VPS53-213ENST00000572334 PCDHA1Q9Y5I3 950 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 MRVI1Q9Y6F6 885 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 TTC3P53804 2025 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 EVPLQ92817 2033 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 RALGAPA2Q2PPJ7 1873 aa7.81□□□□□ -1.16
VPS53-213ENST00000572334 PPFIA4O75335 1185 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 GGPS1O95749 300 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 ACTN1P12814 892 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 ICAM3P32942 547 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 KCNQ1P51787 676 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 MRPS5P82675 430 aaKnown RBP7.8□□□□□ -1.16
VPS53-213ENST00000572334 PTK7Q13308 1070 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 GRB10Q13322 594 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 CNKSR3Q6P9H4 555 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 HOMER1Q86YM7 354 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 DHX37Q8IY37 1157 aaKnown RBP7.8□□□□□ -1.16
VPS53-213ENST00000572334 SAMD3Q8N6K7 520 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 ADAMTS19Q8TE59 1207 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 MAP4K1Q92918 833 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 NOD1Q9Y239 953 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 KIAA1671Q9BY89 1806 aa7.8□□□□□ -1.16
VPS53-213ENST00000572334 COL4A6Q14031 1691 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 PNMA6FA0A0J9YX94 578 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 SPATA31C2B4DYI2 1134 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 IFIT3O14879 490 aaKnown RBP7.79□□□□□ -1.16
VPS53-213ENST00000572334 GJB5O95377 273 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 TGFB3P10600 412 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 CCND2P30279 289 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 ADAM17P78536 824 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 LIN28BQ6ZN17 250 aaKnown RBP eCLIP7.79□□□□□ -1.16
VPS53-213ENST00000572334 SERINC5Q86VE9 423 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 FCHSD1Q86WN1 690 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 MICALL1Q8N3F8 863 aa7.79□□□□□ -1.16
VPS53-213ENST00000572334 C7orf31Q8N865 590 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms