RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 EPOPA6NHQ4 379 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 KIF28PB7ZC32 967 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 IFIT3O14879 490 aaKnown RBP17.32■□□□□ 0.36
CLN3-236ENST00000568558 PARNO95453 639 aaKnown RBP17.32■□□□□ 0.36
CLN3-236ENST00000568558 CXCL10P02778 98 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 CKBP12277 381 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 KCNJ6P48051 423 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 WDR5P61964 334 aaKnown RBP17.32■□□□□ 0.36
CLN3-236ENST00000568558 TRAF1Q13077 416 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 CNKSR3Q6P9H4 555 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 KCNV1Q6PIU1 500 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 RUFY2Q8WXA3 655 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 TSPYL2Q9H2G4 693 aaPredicted RBP17.32■□□□□ 0.36
CLN3-236ENST00000568558 SENP2Q9HC62 589 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 MTCH2Q9Y6C9 303 aa17.32■□□□□ 0.36
CLN3-236ENST00000568558 U3KPZ7 1027 aaPredicted RBP17.32■□□□□ 0.36
CLN3-236ENST00000568558 ERICH2A1L162 156 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 GCOM1H8Y6P7 765 aaPredicted RBP17.31■□□□□ 0.36
CLN3-236ENST00000568558 CYTH3O43739 400 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 GTPBP6O43824 516 aaPredicted RBP17.31■□□□□ 0.36
CLN3-236ENST00000568558 NBNO60934 754 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 GGPS1O95749 300 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 POLR2MP0CAP2 368 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 CHMLP26374 656 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 TROAPQ12815 778 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 PTK7Q13308 1070 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 WTAPQ15007 396 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 TRIM71Q2Q1W2 868 aaKnown RBP17.31■□□□□ 0.36
CLN3-236ENST00000568558 HSDL1Q3SXM5 330 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 CELF3Q5SZQ8 465 aaKnown RBP17.31■□□□□ 0.36
CLN3-236ENST00000568558 ADAMTS19Q8TE59 1207 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 ARNTL2Q8WYA1 636 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 TAF6LQ9Y6J9 622 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 KAT6AQ92794 2004 aa17.31■□□□□ 0.36
CLN3-236ENST00000568558 BDP1A6H8Y1 2624 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 E7EWF7 191 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 TLL1O43897 1013 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 SORBS3O60504 671 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 PPFIA4O75335 1185 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 TGFB3P10600 412 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 UBA1P22314 1058 aaKnown RBP17.3■□□□□ 0.36
CLN3-236ENST00000568558 CCND2P30279 289 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 SP2Q02086 613 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 TRAF7Q6Q0C0 670 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 RALYLQ86SE5 291 aaKnown RBP17.3■□□□□ 0.36
CLN3-236ENST00000568558 NCOA7Q8NI08 942 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 WNT8BQ93098 351 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 SPATA33Q96N06 139 aa17.3■□□□□ 0.36
CLN3-236ENST00000568558 FRMPD4Q14CM0 1322 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 PNMA6FA0A0J9YX94 578 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 IRX6P78412 446 aaPredicted RBP17.29■□□□□ 0.36
CLN3-236ENST00000568558 DEFB103AP81534 67 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 ZNF200P98182 395 aaPredicted RBP17.29■□□□□ 0.36
CLN3-236ENST00000568558 HIC1Q14526 733 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 SART3Q15020 963 aaKnown RBP17.29■□□□□ 0.36
CLN3-236ENST00000568558 TCTN1Q2MV58 587 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 SPRED2Q7Z698 418 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 TMCO2Q7Z6W1 182 aaPredicted RBP17.29■□□□□ 0.36
CLN3-236ENST00000568558 FCHSD1Q86WN1 690 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 IL27Q8NEV9 243 aa17.29■□□□□ 0.36
CLN3-236ENST00000568558 GPKOWQ92917 476 aaPredicted RBP eCLIP17.29■□□□□ 0.36
CLN3-236ENST00000568558 ZFP91Q96JP5 570 aaPredicted RBP17.29■□□□□ 0.36
CLN3-236ENST00000568558 UHRF1Q96T88 793 aaPredicted RBP17.29■□□□□ 0.36
CLN3-236ENST00000568558 ABHD14A-ACY1A0A1B0GW23 586 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 LCHNA4D1U4 455 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 SGSM2O43147 1006 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 ANTXR2P58335 489 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 MBTPS1Q14703 1052 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 ZNF618Q5T7W0 954 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 KRT40Q6A162 431 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 C16orf70Q9BSU1 422 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 NLRC5Q86WI3 1866 aa17.28■□□□□ 0.36
CLN3-236ENST00000568558 EFCAB14O75071 495 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 GJB5O95377 273 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 TFF2Q03403 129 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 GRB10Q13322 594 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 SKIV2LQ15477 1246 aaKnown RBP17.27■□□□□ 0.36
CLN3-236ENST00000568558 CATIPQ7Z7H3 387 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 MB21D2Q8IYB1 491 aaPredicted RBP17.27■□□□□ 0.36
CLN3-236ENST00000568558 ZBED2Q9BTP6 218 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 MLXIPQ9HAP2 919 aa17.27■□□□□ 0.36
CLN3-236ENST00000568558 RBAK-RBAKDNI3L0D1 243 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 LPXNO60711 386 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 BMP1P13497 986 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 ICAM3P32942 547 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 MRPS9P82933 396 aaKnown RBP17.26■□□□□ 0.35
CLN3-236ENST00000568558 IKBKEQ14164 716 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 AAK1Q2M2I8 961 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 GNPTABQ3T906 1256 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 SERINC5Q86VE9 423 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 IGDCC4Q8TDY8 1250 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 MAP4K1Q92918 833 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 INPP4AQ96PE3 977 aaPredicted RBP17.26■□□□□ 0.35
CLN3-236ENST00000568558 BCAS3Q9H6U6 928 aa17.26■□□□□ 0.35
CLN3-236ENST00000568558 BRWD1Q9NSI6 2320 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 H3BRB1 525 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 LGR5O75473 907 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 STAM2O75886 525 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 LGALS2P05162 132 aa17.25■□□□□ 0.35
CLN3-236ENST00000568558 HOXC8P31273 242 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms