RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 CTAGE5O15320 804 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 GH1P01241 217 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 MYCLP12524 364 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-222ENST00000556768 EIF2AK2P19525 551 aaKnown RBP8.46□□□□□ -1.06
SCFD1-222ENST00000556768 CASTP20810 708 aaKnown RBP8.46□□□□□ -1.06
SCFD1-222ENST00000556768 PPIGQ13427 754 aaKnown RBP eCLIP8.46□□□□□ -1.067e-8■■□□□ 12.4
SCFD1-222ENST00000556768 NECTIN1Q15223 517 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 SHHQ15465 462 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 FAM47CQ5HY64 1035 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 STOX1Q6ZVD7 989 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 MB21D2Q8IYB1 491 aaPredicted RBP8.46□□□□□ -1.06
SCFD1-222ENST00000556768 ZNF654Q8IZM8 581 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 PIBF1Q8WXW3 757 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 TBC1D5Q92609 795 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 MTMR8Q96EF0 704 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 RNPC3Q96LT9 517 aaKnown RBP8.46□□□□□ -1.06
SCFD1-222ENST00000556768 NEK1Q96PY6 1258 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 MTIF3Q9H2K0 278 aaKnown RBP8.46□□□□□ -1.06
SCFD1-222ENST00000556768 PXMP2Q9NR77 195 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 NOD1Q9Y239 953 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 MRVI1Q9Y6F6 885 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 MYH4Q9Y623 1939 aa8.46□□□□□ -1.06
SCFD1-222ENST00000556768 SOX1O00570 391 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-222ENST00000556768 TGFB3P10600 412 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 HSD17B4P51659 736 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 CHMP4BP1P59074 171 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 LAMC2Q13753 1193 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 DGKDQ16760 1214 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 GNPTABQ3T906 1256 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 FCHSD1Q86WN1 690 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 FAM126BQ8IXS8 530 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 RPUSD2Q8IZ73 545 aaKnown RBP8.45□□□□□ -1.06
SCFD1-222ENST00000556768 HIPK3Q9H422 1215 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 LY9Q9HBG7 655 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 PRM3Q9NNZ6 103 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 TBX21Q9UL17 535 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 PCDHGA4Q9Y5G9 962 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 TAF6LQ9Y6J9 622 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 STAM2O75886 525 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 CD46P15529 392 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 CCND2P30279 289 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 HOXA13P31271 388 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-222ENST00000556768 FOSBP53539 338 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 ANTXR2P58335 489 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 PURAQ00577 322 aaKnown RBP8.45□□□□□ -1.06
SCFD1-222ENST00000556768 LY6KQ17RY6 165 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 ZNF697Q5TEC3 545 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 PSRC1Q6PGN9 363 aaPredicted RBP8.45□□□□□ -1.06
SCFD1-222ENST00000556768 DHX37Q8IY37 1157 aaKnown RBP8.45□□□□□ -1.06
SCFD1-222ENST00000556768 FANCBQ8NB91 859 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 SLC43A3Q8NBI5 491 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 SMARCC2Q8TAQ2 1214 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 SPZ1Q9BXG8 430 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 PPP1R12CQ9BZL4 782 aa8.45□□□□□ -1.06
SCFD1-222ENST00000556768 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 SH2B2O14492 632 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 CYTH3O43739 400 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 REC8O95072 547 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 SEC24BO95487 1268 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 CD4P01730 458 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 ITGB8P26012 769 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 PSMC6P62333 389 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 SMAD3P84022 425 aaKnown RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 GHRHRQ02643 423 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 C9orf50Q5SZB4 431 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 TMEM63BQ5T3F8 832 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 FAM109BQ6ICB4 259 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 NFRKBQ6P4R8 1299 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 CCDC62Q6P9F0 684 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 DHX32Q7L7V1 743 aaKnown RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 VSIG10LQ86VR7 867 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 AFG1LQ8WV93 481 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 PDCD2LQ9BRP1 358 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 MYL10Q9BUA6 226 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 KATNAL1Q9BW62 490 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 TRPV6Q9H1D0 765 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 ALDH8A1Q9H2A2 487 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 MLXIPQ9HAP2 919 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 SENP2Q9HC62 589 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 RBM28Q9NW13 759 aaKnown RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 COL20A1Q9P218 1284 aa8.44□□□□□ -1.06
SCFD1-222ENST00000556768 COL11A1P12107 1806 aaPredicted RBP8.44□□□□□ -1.06
SCFD1-222ENST00000556768 CCDC196A0A1B0GTZ2 297 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 B4GALT4O60513 344 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 PPP1R11O60927 126 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-222ENST00000556768 LILRB3O75022 631 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 PPFIA4O75335 1185 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 CSF2RAP15509 400 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 CYP2C18P33260 490 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 PTPN11Q06124 597 aaPredicted RBP8.43□□□□□ -1.06
SCFD1-222ENST00000556768 PGM5Q15124 567 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 QPCTQ16769 361 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 NBPF20Q3BBV1 942 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 TSGA10IPQ3SY00 556 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 SGMS1Q86VZ5 419 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 MICU3Q86XE3 530 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 C7orf31Q8N865 590 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 COPS5Q92905 334 aa8.43□□□□□ -1.06
SCFD1-222ENST00000556768 PSTPIP2Q9H939 334 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms