RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, humanhuman

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-223ENST00000540475 MYL10Q9BUA6 226 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 KATNAL1Q9BW62 490 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 ANO2Q9NQ90 1003 aa15.15■□□□□ 0.02
SEMA4D-223ENST00000540475 SPATA31C2B4DYI2 1134 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 PLEKHA8P1O95397 391 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 UBA1P22314 1058 aaKnown RBP15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 PSEN2P49810 448 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 EXOSC10Q01780 885 aaKnown RBP15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 GPNMBQ14956 572 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 XRRA1Q6P2D8 792 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 FCHSD1Q86WN1 690 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 AFAP1L1Q8TED9 768 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 PPP1R13LQ8WUF5 828 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 C16orf70Q9BSU1 422 aa15.14■□□□□ 0.01
SEMA4D-223ENST00000540475 CCDC69A6NI79 296 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 PARNO95453 639 aaKnown RBP15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 GGPS1O95749 300 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 HOXC8P31273 242 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 SEMA3FQ13275 785 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 RNF20Q5VTR2 975 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 PCNX4Q63HM2 1172 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 SKAP1Q86WV1 359 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 TEX2Q8IWB9 1127 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 FANCBQ8NB91 859 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 RETREG2Q8NC44 543 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 MAFAQ8NHW3 353 aaPredicted RBP15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 PHOSPHO2Q8TCD6 241 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 DHX38Q92620 1227 aaKnown RBP15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 GPKOWQ92917 476 aaPredicted RBP eCLIP15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 HDAC6Q9UBN7 1215 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 MSRAQ9UJ68 235 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 SLC12A7Q9Y666 1083 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 SLC4A7Q9Y6M7 1214 aa15.13■□□□□ 0.01
SEMA4D-223ENST00000540475 KAT6AQ92794 2004 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 CXCL10P02778 98 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 FOSL2P15408 326 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 MFSD10Q14728 455 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 KIAA0753Q2KHM9 967 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 TRIM71Q2Q1W2 868 aaKnown RBP15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 GNPTABQ3T906 1256 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 USP17L6PQ6QN14 398 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 NFXL1Q6ZNB6 911 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 TMTC3Q6ZXV5 915 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 CCDC155Q8N6L0 562 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 KCNB2Q92953 911 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 SPATA33Q96N06 139 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 NEK1Q96PY6 1258 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 SENP7Q9BQF6 1050 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 SEC63Q9UGP8 760 aaKnown RBP15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 YBX2Q9Y2T7 364 aaKnown RBP15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 PCDHA11Q9Y5I1 949 aa15.12■□□□□ 0.01
SEMA4D-223ENST00000540475 CUL9Q8IWT3 2517 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 MUC3AQ02505 3323 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 XIRP2A4UGR9 3374 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 DLL1O00548 723 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 FIBPO43427 364 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 ACTN1P12814 892 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 PTK7Q13308 1070 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 NEDD9Q14511 834 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 HIC1Q14526 733 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 TRAF7Q6Q0C0 670 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 METTL7BQ6UX53 244 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 DHX32Q7L7V1 743 aaKnown RBP15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 RASEFQ8IZ41 740 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 C7orf31Q8N865 590 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 BCAS3Q9H6U6 928 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 NOD1Q9Y239 953 aa15.11■□□□□ 0.01
SEMA4D-223ENST00000540475 CDC45O75419 566 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 BAIAP3O94812 1187 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 ZNF286BP0CG31 522 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 CKBP12277 381 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 SELPP16109 830 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 ATP2A2P16615 1042 aaKnown RBP15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 RXRAP19793 462 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 FUT2Q10981 343 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 APOA5Q6Q788 366 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 DEFB128Q7Z7B8 93 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 CMTR1Q8N1G2 835 aaKnown RBP15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 SMARCC2Q8TAQ2 1214 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 PIBF1Q8WXW3 757 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 CUL5Q93034 780 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 ZFP91Q96JP5 570 aaPredicted RBP15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 SLC9A7Q96T83 725 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 USP26Q9BXU7 913 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 LRRC2Q9BYS8 371 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 PSTPIP2Q9H939 334 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 MLXIPQ9HAP2 919 aa15.1■□□□□ 0.01
SEMA4D-223ENST00000540475 H3BRB1 525 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 RCAN1P53805 252 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 KRT32Q14532 448 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 ADCK5Q3MIX3 580 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 LRRC8DQ7L1W4 858 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 SERINC5Q86VE9 423 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 FBXL16Q8N461 479 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 GPR20Q99678 358 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 ALG1Q9BT22 464 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 NKX2-4Q9H2Z4 354 aa15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 TUT1Q9H6E5 874 aaKnown RBP15.09■□□□□ 0.01
SEMA4D-223ENST00000540475 SLC28A3Q9HAS3 691 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms