RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 ADGRE1Q14246 886 aa20.59■□□□□ 0.89
PCF11-206ENST00000533018 HSDL1Q3SXM5 330 aa20.59■□□□□ 0.89
PCF11-206ENST00000533018 ZNF654Q8IZM8 581 aa20.59■□□□□ 0.89
PCF11-206ENST00000533018 RRP36Q96EU6 259 aaKnown RBP20.59■□□□□ 0.89
PCF11-206ENST00000533018 SLC9A7Q96T83 725 aa20.59■□□□□ 0.89
PCF11-206ENST00000533018 SEC63Q9UGP8 760 aaKnown RBP20.59■□□□□ 0.89
PCF11-206ENST00000533018 CCDC69A6NI79 296 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 PPFIA4O75335 1185 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 F2P00734 622 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 CA3P07451 260 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 TGFB3P10600 412 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 SELPP16109 830 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 UBA1P22314 1058 aaKnown RBP20.58■□□□□ 0.89
PCF11-206ENST00000533018 MCM5P33992 734 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 KCNJ6P48051 423 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 SP2Q02086 613 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 LRRC8DQ7L1W4 858 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 SMARCC2Q8TAQ2 1214 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 SYMPKQ92797 1274 aaKnown RBP20.58■□□□□ 0.89
PCF11-206ENST00000533018 GPKOWQ92917 476 aaPredicted RBP eCLIP20.58■□□□□ 0.89
PCF11-206ENST00000533018 CTAGE1Q96RT6 745 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 LY9Q9HBG7 655 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 PRDM6Q9NQX0 595 aa20.58■□□□□ 0.89
PCF11-206ENST00000533018 KIF28PB7ZC32 967 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 DDAH1O94760 285 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 CKBP12277 381 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 GNPTABQ3T906 1256 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 MICALL1Q8N3F8 863 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 PHOSPHO2Q8TCD6 241 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 DHX38Q92620 1227 aaKnown RBP20.57■□□□□ 0.88
PCF11-206ENST00000533018 CUL5Q93034 780 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 CERS4Q9HA82 394 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 RTEL1Q9NZ71 1219 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 TRANK1O15050 2925 aa20.57■□□□□ 0.88
PCF11-206ENST00000533018 NOP56O00567 594 aaKnown RBP20.56■□□□□ 0.88
PCF11-206ENST00000533018 BAIAP3O94812 1187 aa20.56■□□□□ 0.88
PCF11-206ENST00000533018 ZNF200P98182 395 aaPredicted RBP20.56■□□□□ 0.88
PCF11-206ENST00000533018 PTK7Q13308 1070 aa20.56■□□□□ 0.88
PCF11-206ENST00000533018 TMTC2Q8N394 836 aa20.56■□□□□ 0.88
PCF11-206ENST00000533018 MAP3K14Q99558 947 aa20.56■□□□□ 0.88
PCF11-206ENST00000533018 SPZ1Q9BXG8 430 aa20.56■□□□□ 0.88
PCF11-206ENST00000533018 LSG1Q9H089 658 aaKnown RBP20.56■□□□□ 0.88
PCF11-206ENST00000533018 ANO2Q9NQ90 1003 aa20.56■□□□□ 0.88
PCF11-206ENST00000533018 HAS3O00219 553 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 PARNO95453 639 aaKnown RBP20.55■□□□□ 0.88
PCF11-206ENST00000533018 RXRAP19793 462 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 HERC6Q8IVU3 1022 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 CMTR1Q8N1G2 835 aaKnown RBP20.55■□□□□ 0.88
PCF11-206ENST00000533018 TMEM87BQ96K49 555 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 LZTS2Q9BRK4 669 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 ESYT1Q9BSJ8 1104 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 DOCK5Q9H7D0 1870 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 TTC28Q96AY4 2481 aa20.55■□□□□ 0.88
PCF11-206ENST00000533018 REV3LO60673 3130 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 SLC27A2O14975 620 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 TLL1O43897 1013 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 GNAQP50148 359 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 MRPS9P82933 396 aaKnown RBP20.54■□□□□ 0.88
PCF11-206ENST00000533018 TJAP1Q5JTD0 557 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 USP17L6PQ6QN14 398 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 RAB11FIP4Q86YS3 637 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 MTA3Q9BTC8 594 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 ZBED2Q9BTP6 218 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 BCAS3Q9H6U6 928 aa20.54■□□□□ 0.88
PCF11-206ENST00000533018 H3BRB1 525 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 RFXAPO00287 272 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 SH2B2O14492 632 aaPredicted RBP20.53■□□□□ 0.88
PCF11-206ENST00000533018 NBNO60934 754 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 STAM2O75886 525 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 PLEKHA8P1O95397 391 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CALM1P0DP23 149 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CALM2P0DP24 149 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CALM3P0DP25 149 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 HOXD8P13378 290 aaPredicted RBP20.53■□□□□ 0.88
PCF11-206ENST00000533018 NEDD9Q14511 834 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 ZNF618Q5T7W0 954 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CREB3L3Q68CJ9 461 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CNKSR3Q6P9H4 555 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CYFIP1Q7L576 1253 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 CCDC82Q8N4S0 544 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 SRBD1Q8N5C6 995 aaKnown RBP20.53■□□□□ 0.88
PCF11-206ENST00000533018 ARNTL2Q8WYA1 636 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 C16orf70Q9BSU1 422 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 LRRC2Q9BYS8 371 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 TSPYL2Q9H2G4 693 aaPredicted RBP20.53■□□□□ 0.88
PCF11-206ENST00000533018 TUT1Q9H6E5 874 aaKnown RBP20.53■□□□□ 0.88
PCF11-206ENST00000533018 THEGQ9P2T0 379 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 SLC12A7Q9Y666 1083 aa20.53■□□□□ 0.88
PCF11-206ENST00000533018 C17orf102A2RUQ5 167 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 FIBPO43427 364 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 SMARCA1P28370 1054 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 THPOP40225 353 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 WDR5P61964 334 aaKnown RBP20.52■□□□□ 0.88
PCF11-206ENST00000533018 SP4Q02446 784 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 RBL2Q08999 1139 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 GPNMBQ14956 572 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 TMCO2Q7Z6W1 182 aaPredicted RBP20.52■□□□□ 0.88
PCF11-206ENST00000533018 ATP6V0A1Q93050 837 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 WNT8BQ93098 351 aa20.52■□□□□ 0.88
PCF11-206ENST00000533018 FRMPD4Q14CM0 1322 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms