RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 ZNF467Q7Z7K2 595 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-231ENST00000494043 DPP9Q86TI2 863 aa12.88□□□□□ -0.35
MCF2L-231ENST00000494043 NLRX1Q86UT6 975 aa12.88□□□□□ -0.35
MCF2L-231ENST00000494043 SOCS4Q8WXH5 440 aa12.88□□□□□ -0.35
MCF2L-231ENST00000494043 SLC5A5Q92911 643 aa12.88□□□□□ -0.35
MCF2L-231ENST00000494043 ZNF577Q9BSK1 485 aa12.88□□□□□ -0.35
MCF2L-231ENST00000494043 TTC12Q9H892 705 aaPredicted RBP12.88□□□□□ -0.35
MCF2L-231ENST00000494043 KCNH7Q9NS40 1196 aa12.88□□□□□ -0.35
MCF2L-231ENST00000494043 DIS3Q9Y2L1 958 aaKnown RBP12.88□□□□□ -0.35
MCF2L-231ENST00000494043 A0A1B0GVL5 298 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 TNPO2O14787 897 aaKnown RBP12.87□□□□□ -0.35
MCF2L-231ENST00000494043 TRAK2O60296 914 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 RGS20O76081 388 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 ECM2O94769 699 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-231ENST00000494043 PFKFB1P16118 471 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 LIG1P18858 919 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 CTGFP29279 349 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 TECP42680 631 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 FCGRTP55899 365 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 MAP2K5Q13163 448 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 GNPTABQ3T906 1256 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 SPECC1Q5M775 1068 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 CCDC73Q6ZRK6 1079 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 IGSF22Q8N9C0 903 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 USP6NLQ92738 828 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 SYMPKQ92797 1274 aaKnown RBP12.87□□□□□ -0.35
MCF2L-231ENST00000494043 GJA10Q969M2 543 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 CDHR1Q96JP9 859 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 AK8Q96MA6 479 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 UIMC1Q96RL1 719 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 RAB34Q9BZG1 259 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 AGO4Q9HCK5 861 aaKnown RBP12.87□□□□□ -0.35
MCF2L-231ENST00000494043 RNF216Q9NWF9 866 aaPredicted RBP12.87□□□□□ -0.35
MCF2L-231ENST00000494043 SAGE1Q9NXZ1 904 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 SLC5A4Q9NY91 659 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 FAM13BQ9NYF5 915 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 VAV3Q9UKW4 847 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 HPSEQ9Y251 543 aa12.87□□□□□ -0.35
MCF2L-231ENST00000494043 ZNFX1Q9P2E3 1918 aaKnown RBP12.86□□□□□ -0.35
MCF2L-231ENST00000494043 IPO5O00410 1097 aaKnown RBP12.86□□□□□ -0.35
MCF2L-231ENST00000494043 MAFGO15525 162 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 PSMD10O75832 226 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 HOXC6P09630 235 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 RGS2P41220 211 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 PSMC4P43686 418 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 NDUFA8P51970 172 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 SP3Q02447 781 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 FAM160A1Q05DH4 1040 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 SPIRE1Q08AE8 756 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 SEMA3FQ13275 785 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 PDIA5Q14554 519 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 LRCH2Q5VUJ6 765 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 USP49Q70CQ1 688 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 ARMCX2Q7L311 632 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 NPLOC4Q8TAT6 608 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 EPSTI1Q96J88 318 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 MAML3Q96JK9 1138 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 TRIM47Q96LD4 638 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 RIT2Q99578 217 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 NUDT12Q9BQG2 462 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 TEKT3Q9BXF9 490 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 ARHGAP39Q9C0H5 1083 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 PCDHA12Q9UN75 941 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 PLXNA1Q9UIW2 1896 aa12.86□□□□□ -0.35
MCF2L-231ENST00000494043 POTEMA6NI47 508 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 PP2D1A8MPX8 630 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 SPATA31C2B4DYI2 1134 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 GAS7O60861 476 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 NR1I2O75469 434 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 ICAM3P32942 547 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 TXLNAP40222 546 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 ITGB3BPQ13352 177 aaPredicted RBP12.85□□□□□ -0.35
MCF2L-231ENST00000494043 SNW1Q13573 536 aaKnown RBP12.85□□□□□ -0.35
MCF2L-231ENST00000494043 KIF22Q14807 665 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 MAMDC4Q6UXC1 1216 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 FMR1NBQ8N0W7 255 aaPredicted RBP12.85□□□□□ -0.35
MCF2L-231ENST00000494043 MSL3Q8N5Y2 521 aaKnown RBP12.85□□□□□ -0.35
MCF2L-231ENST00000494043 ENGASEQ8NFI3 743 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 APBA2Q99767 749 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 TBC1D22BQ9NU19 505 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 PKD2L1Q9P0L9 805 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 LRWD1Q9UFC0 647 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 GJD2Q9UKL4 321 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 KCNH3Q9ULD8 1083 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 CEP350Q5VT06 3117 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 SYNGAP1Q96PV0 1343 aa12.85□□□□□ -0.35
MCF2L-231ENST00000494043 ZSWIM8A7E2V4 1837 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 DHX15O43143 795 aaKnown RBP12.84□□□□□ -0.35
MCF2L-231ENST00000494043 ATP9AO75110 1047 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 KCNA2P16389 499 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 CDC25AP30304 524 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 UBA7P41226 1012 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 SYKP43405 635 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 PPP2R5CQ13362 524 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 NCAPH2Q6IBW4 605 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 B3GNT9Q6UX72 402 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 SEPT14Q6ZU15 432 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 OTOP1Q7RTM1 612 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 CABP7Q86V35 215 aa12.84□□□□□ -0.35
MCF2L-231ENST00000494043 FBXO16Q8IX29 292 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms