RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 LY6KQ17RY6 165 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 CEP55Q53EZ4 464 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 BRDTQ58F21 947 aaPredicted RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 GJC2Q5T442 439 aaPredicted RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 IFFO2Q5TF58 517 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 LARP1BQ659C4 914 aaKnown RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 PIK3AP1Q6ZUJ8 805 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 NIPA1Q7RTP0 329 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 OR6J1Q8NGC5 347 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 CRYGNQ8WXF5 182 aa12.38□□□□□ -0.43
VPS13D-210ENST00000489961 UPF3AQ9H1J1 476 aaKnown RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 DDX41Q9UJV9 622 aaKnown RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 KIAA0100Q14667 2235 aaKnown RBP12.38□□□□□ -0.43
VPS13D-210ENST00000489961 DNM1LO00429 736 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 ZEB2O60315 1214 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 ADAMTS4O75173 837 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 CIITAP33076 1130 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 SETQ01105 290 aaPredicted RBP12.37□□□□□ -0.43
VPS13D-210ENST00000489961 NEDD9Q14511 834 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 LRRC41Q15345 812 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 INF2Q27J81 1249 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 TMEM63BQ5T3F8 832 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 NEK8Q86SG6 692 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 PLA2G4DQ86XP0 818 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 DHX37Q8IY37 1157 aaKnown RBP12.37□□□□□ -0.43
VPS13D-210ENST00000489961 GIMAP8Q8ND71 665 aaPredicted RBP12.37□□□□□ -0.43
VPS13D-210ENST00000489961 COPS5Q92905 334 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 TNFRSF25Q93038 417 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 NAP1L4Q99733 375 aaKnown RBP12.37□□□□□ -0.43
VPS13D-210ENST00000489961 FOXP1Q9H334 677 aaPredicted RBP12.37□□□□□ -0.43
VPS13D-210ENST00000489961 FOXD4L1Q9NU39 408 aa12.37□□□□□ -0.43
VPS13D-210ENST00000489961 FAM86B1E9PN63 330 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 MEIS1O00470 390 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 CAPN15O75808 1086 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 FARP2O94887 1054 aaPredicted RBP12.36□□□□□ -0.43
VPS13D-210ENST00000489961 GGPS1O95749 300 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 FAM86B2P0C5J1 330 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 UBA1P22314 1058 aaKnown RBP12.36□□□□□ -0.43
VPS13D-210ENST00000489961 CST5P28325 142 aaPredicted RBP12.36□□□□□ -0.43
VPS13D-210ENST00000489961 CPT1AP50416 773 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 NKX3-2P78367 333 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 SEMA3FQ13275 785 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 LAMC2Q13753 1193 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 FSCN1Q16658 493 aaKnown RBP12.36□□□□□ -0.43
VPS13D-210ENST00000489961 GNASQ5JWF2 1037 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 MOXD1Q6UVY6 613 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 PCSK9Q8NBP7 692 aaKnown RBP12.36□□□□□ -0.43
VPS13D-210ENST00000489961 KLHDC9Q8NEP7 349 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 CYP2W1Q8TAV3 490 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 SENP7Q9BQF6 1050 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 TSEN34Q9BSV6 310 aaKnown RBP12.36□□□□□ -0.43
VPS13D-210ENST00000489961 MLXIPQ9HAP2 919 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 KCNH7Q9NS40 1196 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 DOCK5Q9H7D0 1870 aa12.36□□□□□ -0.43
VPS13D-210ENST00000489961 IGLV3-22A0A075B6J6 115 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 MOXD2PA6NHM9 499 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 ARP10275 920 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 GCFC2P16383 781 aaKnown RBP12.35□□□□□ -0.43
VPS13D-210ENST00000489961 PTGS1P23219 599 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 BEX3Q00994 111 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 SP2Q02086 613 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 ARHGAP1Q07960 439 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 LETM2Q2VYF4 491 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 PRR16Q569H4 304 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 EARS2Q5JPH6 523 aaKnown RBP12.35□□□□□ -0.43
VPS13D-210ENST00000489961 CELF3Q5SZQ8 465 aaKnown RBP12.35□□□□□ -0.43
VPS13D-210ENST00000489961 MYSM1Q5VVJ2 828 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 MCTP1Q6DN14 999 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 METTL7BQ6UX53 244 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 NECAB2Q7Z6G3 386 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 NOSTRINQ8IVI9 506 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 EMID1Q96A84 441 aaPredicted RBP12.35□□□□□ -0.43
VPS13D-210ENST00000489961 AGO4Q9HCK5 861 aaKnown RBP12.35□□□□□ -0.43
VPS13D-210ENST00000489961 PKD2L1Q9P0L9 805 aa12.35□□□□□ -0.43
VPS13D-210ENST00000489961 CYP3A7-CYP3A51PA0A087WV96 503 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 MYADML2A6NDP7 307 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 FAM205CA6NFA0 338 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 NOP56O00567 594 aaKnown RBP12.34□□□□□ -0.43
VPS13D-210ENST00000489961 SORBS3O60504 671 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 CCNT1O60563 726 aaKnown RBP12.34□□□□□ -0.43
VPS13D-210ENST00000489961 KPNA6O60684 536 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 ATP9AO75110 1047 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 TDP2O95551 362 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 KCNA2P16389 499 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 CYP3A7P24462 503 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 U2AF2P26368 475 aaKnown RBP eCLIP12.34□□□□□ -0.43
VPS13D-210ENST00000489961 IRX5P78411 483 aaPredicted RBP12.34□□□□□ -0.43
VPS13D-210ENST00000489961 KCNA10Q16322 511 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 Q4G0T1 1027 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 PPP4R3AQ6IN85 833 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 CYFIP1Q7L576 1253 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 PPTC7Q8NI37 304 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 AFG1LQ8WV93 481 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 PAWRQ96IZ0 340 aaKnown RBP12.34□□□□□ -0.43
VPS13D-210ENST00000489961 SPATA33Q96N06 139 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 SDF4Q9BRK5 362 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 ZNF577Q9BSK1 485 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 C11orf49Q9H6J7 331 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 POLR3EQ9NVU0 708 aa12.34□□□□□ -0.43
VPS13D-210ENST00000489961 DDX25Q9UHL0 483 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms