RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 GCOM1H8Y6P7 765 aaPredicted RBP8.14□□□□□ -1.11
HDAC3-207ENST00000475549 MEIS2O14770 477 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 PLEKHA8P1O95397 391 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 CA3P07451 260 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 PFKMP08237 780 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 POLR2MP0CAP2 368 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 CKBP12277 381 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 UBA1P22314 1058 aaKnown RBP8.14□□□□□ -1.11
HDAC3-207ENST00000475549 RFC2P35250 354 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 PSEN2P49810 448 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 RBL2Q08999 1139 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 SEMA3FQ13275 785 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 BFSP2Q13515 415 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 MFSD10Q14728 455 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 WTAPQ15007 396 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 NECTIN1Q15223 517 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 KIAA0753Q2KHM9 967 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 USP17L6PQ6QN14 398 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 DHX37Q8IY37 1157 aaKnown RBP8.14□□□□□ -1.11
HDAC3-207ENST00000475549 SRBD1Q8N5C6 995 aaKnown RBP8.14□□□□□ -1.11
HDAC3-207ENST00000475549 SAMD3Q8N6K7 520 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 C7orf31Q8N865 590 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 RETREG2Q8NC44 543 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 PHOSPHO2Q8TCD6 241 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 PIBF1Q8WXW3 757 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 SPATA33Q96N06 139 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 ALG1Q9BT22 464 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 MTIF3Q9H2K0 278 aaKnown RBP8.14□□□□□ -1.11
HDAC3-207ENST00000475549 CERS4Q9HA82 394 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 RTEL1Q9NZ71 1219 aa8.14□□□□□ -1.11
HDAC3-207ENST00000475549 TTC28Q96AY4 2481 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 FRMPD4Q14CM0 1322 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 LCHNA4D1U4 455 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 SPATA31C2B4DYI2 1134 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 SH2B2O14492 632 aaPredicted RBP8.13□□□□□ -1.11
HDAC3-207ENST00000475549 SLC27A2O14975 620 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 LPXNO60711 386 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 GGPS1O95749 300 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 CXCL10P02778 98 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 TGFB3P10600 412 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 SELPP16109 830 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 RXRAP19793 462 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 IGFBP4P22692 258 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 HOXC8P31273 242 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 TAP1Q03518 808 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 MKRN4PQ13434 485 aaPredicted RBP8.13□□□□□ -1.11
HDAC3-207ENST00000475549 ZNF618Q5T7W0 954 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 PPP2R2DQ66LE6 453 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 KRT40Q6A162 431 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 KCNV1Q6PIU1 500 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 LRRC8DQ7L1W4 858 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 CATIPQ7Z7H3 387 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 RALYLQ86SE5 291 aaKnown RBP8.13□□□□□ -1.11
HDAC3-207ENST00000475549 HERC6Q8IVU3 1022 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 ZNF654Q8IZM8 581 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 CAGE1Q8TC20 777 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 INPP4AQ96PE3 977 aaPredicted RBP8.13□□□□□ -1.11
HDAC3-207ENST00000475549 GAS2L1Q99501 681 aaPredicted RBP8.13□□□□□ -1.11
HDAC3-207ENST00000475549 ESYT1Q9BSJ8 1104 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 FTOQ9C0B1 505 aaKnown RBP eCLIP8.13□□□□□ -1.11
HDAC3-207ENST00000475549 NOD1Q9Y239 953 aa8.13□□□□□ -1.11
HDAC3-207ENST00000475549 TRANK1O15050 2925 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 hCG_1642624A0A1W2PR95 340 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 ERICH2A1L162 156 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 PIK3CDO00329 1044 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 PRC1O43663 620 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 ATP9AO75110 1047 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 ACTN1P12814 892 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 POU3F3P20264 500 aaPredicted RBP8.12□□□□□ -1.11
HDAC3-207ENST00000475549 SMARCA1P28370 1054 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 CCND2P30279 289 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 ICAM3P32942 547 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 WDR5P61964 334 aaKnown RBP8.12□□□□□ -1.11
HDAC3-207ENST00000475549 DEFB103AP81534 67 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 PTK7Q13308 1070 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 SART3Q15020 963 aaKnown RBP8.12□□□□□ -1.11
HDAC3-207ENST00000475549 CREB3L3Q68CJ9 461 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 CYFIP1Q7L576 1253 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 SERINC5Q86VE9 423 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 RAB11FIP4Q86YS3 637 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 AFAP1L1Q8TED9 768 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 SLC9A7Q96T83 725 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 MAP3K14Q99558 947 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 GPR20Q99678 358 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 SPZ1Q9BXG8 430 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 LRRC2Q9BYS8 371 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 RNPEPQ9H4A4 650 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 MLXIPQ9HAP2 919 aa8.12□□□□□ -1.11
HDAC3-207ENST00000475549 SCN10AQ9Y5Y9 1956 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 H3BRB1 525 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 TREHO43280 583 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 DDAH1O94760 285 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 BAIAP3O94812 1187 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 LGALS2P05162 132 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 ITGB5P18084 799 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 MCM5P33992 734 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 EXOSC10Q01780 885 aaKnown RBP8.11□□□□□ -1.11
HDAC3-207ENST00000475549 TJAP1Q5JTD0 557 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 PCNX4Q63HM2 1172 aa8.11□□□□□ -1.11
HDAC3-207ENST00000475549 METTL7BQ6UX53 244 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms