RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 RRP36Q96EU6 259 aaKnown RBP19.27■□□□□ 0.68
USP40-212ENST00000473191 NKX2-4Q9H2Z4 354 aa19.27■□□□□ 0.68
USP40-212ENST00000473191 TMEM265A0A087WTH1 108 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 HAS3O00219 553 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 DLL1O00548 723 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 F2P00734 622 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 KIF5BP33176 963 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 MFSD10Q14728 455 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 KIAA0753Q2KHM9 967 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 TCTN1Q2MV58 587 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 SESTD1Q86VW0 696 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 MICU3Q86XE3 530 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 USP38Q8NB14 1042 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 SPATA33Q96N06 139 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 MTA3Q9BTC8 594 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 GTF2IRD1Q9UHL9 959 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 BRPF3Q9ULD4 1205 aa19.26■□□□□ 0.67
USP40-212ENST00000473191 TET1Q8NFU7 2136 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 ZBBXA8MT70 800 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 HOXD8P13378 290 aaPredicted RBP19.25■□□□□ 0.67
USP40-212ENST00000473191 EXOSC10Q01780 885 aaKnown RBP19.25■□□□□ 0.67
USP40-212ENST00000473191 RPUSD2Q8IZ73 545 aaKnown RBP19.25■□□□□ 0.67
USP40-212ENST00000473191 NEK1Q96PY6 1258 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 C16orf70Q9BSU1 422 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 PRDM12Q9H4Q4 367 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 NOD1Q9Y239 953 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 SLC12A7Q9Y666 1083 aa19.25■□□□□ 0.67
USP40-212ENST00000473191 CHD9Q3L8U1 2897 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 PITPNM1O00562 1244 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 CPA1P15085 419 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 SMARCA1P28370 1054 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 UBE2SQ16763 222 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 TMTC3Q6ZXV5 915 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 SGMS1Q86VZ5 419 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.24■□□□□ 0.67
USP40-212ENST00000473191 FANCBQ8NB91 859 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 SMARCC2Q8TAQ2 1214 aa19.24■□□□□ 0.67
USP40-212ENST00000473191 INPP4AQ96PE3 977 aaPredicted RBP19.24■□□□□ 0.67
USP40-212ENST00000473191 PTPRSQ13332 1948 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 SPATA31C2B4DYI2 1134 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 CDC45O75419 566 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 ADGRE1Q14246 886 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 TMTC2Q8N394 836 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 C7orf31Q8N865 590 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 MLXIPQ9HAP2 919 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 SEC63Q9UGP8 760 aaKnown RBP19.23■□□□□ 0.67
USP40-212ENST00000473191 SLC4A7Q9Y6M7 1214 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 A0A0C4DFX4 3053 aa19.23■□□□□ 0.67
USP40-212ENST00000473191 PIK3CDO00329 1044 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 ARHGEF15O94989 841 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 CKBP12277 381 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 ICAM3P32942 547 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 GNAQP50148 359 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 TRAF1Q13077 416 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 BFSP2Q13515 415 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 TRIM71Q2Q1W2 868 aaKnown RBP19.22■□□□□ 0.67
USP40-212ENST00000473191 TYW1BQ6NUM6 668 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 KCNV1Q6PIU1 500 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 TRAF7Q6Q0C0 670 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 APOA5Q6Q788 366 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 CYFIP1Q7L576 1253 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 TMCO2Q7Z6W1 182 aaPredicted RBP19.22■□□□□ 0.67
USP40-212ENST00000473191 RETREG2Q8NC44 543 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 LZTS2Q9BRK4 669 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 CNTNAP5Q8WYK1 1306 aa19.22■□□□□ 0.67
USP40-212ENST00000473191 NBNO60934 754 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 PPFIA4O75335 1185 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 TGFB3P10600 412 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 ATP2A2P16615 1042 aaKnown RBP19.21■□□□□ 0.67
USP40-212ENST00000473191 TRIM50Q86XT4 487 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 FTOQ9C0B1 505 aaKnown RBP eCLIP19.21■□□□□ 0.67
USP40-212ENST00000473191 MTIF3Q9H2K0 278 aaKnown RBP19.21■□□□□ 0.67
USP40-212ENST00000473191 PRDM6Q9NQX0 595 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 FAM217BQ9NTX9 383 aaPredicted RBP19.21■□□□□ 0.67
USP40-212ENST00000473191 MSRAQ9UJ68 235 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 CHD7Q9P2D1 2997 aa19.21■□□□□ 0.67
USP40-212ENST00000473191 ATP9AO75110 1047 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 LGALS2P05162 132 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 PFKMP08237 780 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 CALM1P0DP23 149 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 CALM2P0DP24 149 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 CALM3P0DP25 149 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 SP4Q02446 784 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 FUT2Q10981 343 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 MBTPS1Q14703 1052 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 RAB30Q15771 203 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 ZNF618Q5T7W0 954 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 PCNX4Q63HM2 1172 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 WWC2Q6AWC2 1192 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 LRRC8DQ7L1W4 858 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 DHX32Q7L7V1 743 aaKnown RBP19.2■□□□□ 0.66
USP40-212ENST00000473191 HEATR3Q7Z4Q2 680 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 SPRED2Q7Z698 418 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 CAGE1Q8TC20 777 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 CUL5Q93034 780 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 PGBD1Q96JS3 809 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 GPR20Q99678 358 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 KATNAL1Q9BW62 490 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 OSBPL7Q9BZF2 842 aa19.2■□□□□ 0.66
USP40-212ENST00000473191 PSTPIP2Q9H939 334 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms