RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PIBF1Q8WXW3 757 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 TMEM87BQ96K49 555 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 ALG1Q9BT22 464 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 MYL10Q9BUA6 226 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 HDAC6Q9UBN7 1215 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 FRMPD4Q14CM0 1322 aa19.16■□□□□ 0.66
CCDC28B-204ENST00000469003 NCOR1O75376 2440 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 SH2B2O14492 632 aaPredicted RBP19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 SLC27A2O14975 620 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 PPFIA4O75335 1185 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 GGPS1O95749 300 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 ZNF286BP0CG31 522 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 UBA1P22314 1058 aaKnown RBP19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 GNAQP50148 359 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 KIAA0753Q2KHM9 967 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 RRP36Q96EU6 259 aaKnown RBP19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 SPATA33Q96N06 139 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 LZTS2Q9BRK4 669 aa19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 FTOQ9C0B1 505 aaKnown RBP eCLIP19.15■□□□□ 0.66
CCDC28B-204ENST00000469003 STAM2O75886 525 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 SP2Q02086 613 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 RBL2Q08999 1139 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 NECTIN1Q15223 517 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 HSDL1Q3SXM5 330 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 GNPTABQ3T906 1256 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 CREB3L3Q68CJ9 461 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 NFXL1Q6ZNB6 911 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 DHX38Q92620 1227 aaKnown RBP19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 GPKOWQ92917 476 aaPredicted RBP eCLIP19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 ZFP91Q96JP5 570 aaPredicted RBP19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 SLC9A7Q96T83 725 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 MYO9BQ13459 2157 aa19.14■□□□□ 0.65
CCDC28B-204ENST00000469003 CCDC69A6NI79 296 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 PARNO95453 639 aaKnown RBP19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 MYOGP15173 224 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 SELPP16109 830 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 LIFRP42702 1097 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 MRPS9P82933 396 aaKnown RBP19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 PPP2R2DQ66LE6 453 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 LRRC8DQ7L1W4 858 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 USP38Q8NB14 1042 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 PHOSPHO2Q8TCD6 241 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 MLXIPQ9HAP2 919 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 ANO2Q9NQ90 1003 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 SEC63Q9UGP8 760 aaKnown RBP19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 TET1Q8NFU7 2136 aa19.13■□□□□ 0.65
CCDC28B-204ENST00000469003 SORBS3O60504 671 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 BAIAP3O94812 1187 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 PLEKHA8P1O95397 391 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 CALM1P0DP23 149 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 CALM2P0DP24 149 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 CALM3P0DP25 149 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 ICAM3P32942 547 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 PTK7Q13308 1070 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 COL9A3Q14050 684 aaPredicted RBP19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 BMP2KLQ5H9B9 411 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 SRBD1Q8N5C6 995 aaKnown RBP19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 SMARCC2Q8TAQ2 1214 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 CUL5Q93034 780 aa19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 INPP4AQ96PE3 977 aaPredicted RBP19.12■□□□□ 0.65
CCDC28B-204ENST00000469003 PIK3CDO00329 1044 aa19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 CKBP12277 381 aa19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 ADGRE1Q14246 886 aa19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 GPNMBQ14956 572 aa19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 CENPQQ7L2Z9 268 aaPredicted RBP19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 C16orf70Q9BSU1 422 aa19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 CHD9Q3L8U1 2897 aa19.11■□□□□ 0.65
CCDC28B-204ENST00000469003 SPATA31C2B4DYI2 1134 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 MEIS2O14770 477 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 CXCL10P02778 98 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 RXRAP19793 462 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 NEDD9Q14511 834 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 TRIM71Q2Q1W2 868 aaKnown RBP19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 XRRA1Q6P2D8 792 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 USP17L6PQ6QN14 398 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 SLC12A7Q9Y666 1083 aa19.1■□□□□ 0.65
CCDC28B-204ENST00000469003 FIBPO43427 364 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 IGFBP4P22692 258 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 ZNF200P98182 395 aaPredicted RBP19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 SEMA3FQ13275 785 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 RNF20Q5VTR2 975 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 PCNX4Q63HM2 1172 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 CNKSR3Q6P9H4 555 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 METTL7BQ6UX53 244 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 SGMS1Q86VZ5 419 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 HERC6Q8IVU3 1022 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 LRRC2Q9BYS8 371 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 BCAS3Q9H6U6 928 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 RTEL1Q9NZ71 1219 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 PTPRSQ13332 1948 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 DOCK5Q9H7D0 1870 aa19.09■□□□□ 0.65
CCDC28B-204ENST00000469003 KIF28PB7ZC32 967 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 H3BRB1 525 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 NOP56O00567 594 aaKnown RBP19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 NBNO60934 754 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 LGALS2P05162 132 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 CA3P07451 260 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 KCNJ6P48051 423 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 HIC1Q14526 733 aa19.08■□□□□ 0.64
CCDC28B-204ENST00000469003 CYFIP1Q7L576 1253 aa19.08■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms