RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 MAP3K20Q9NYL2 800 aaKnown RBP18.69■□□□□ 0.58
COL7A1-204ENST00000462475 MTCH2Q9Y6C9 303 aa18.69■□□□□ 0.58
COL7A1-204ENST00000462475 GGPS1O95749 300 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 UBA1P22314 1058 aaKnown RBP18.68■□□□□ 0.58
COL7A1-204ENST00000462475 CHMLP26374 656 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 KCNJ6P48051 423 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 DEFB103AP81534 67 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 ZNF200P98182 395 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-204ENST00000462475 HIC1Q14526 733 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 TRIM71Q2Q1W2 868 aaKnown RBP18.68■□□□□ 0.58
COL7A1-204ENST00000462475 HSDL1Q3SXM5 330 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 CELF3Q5SZQ8 465 aaKnown RBP18.68■□□□□ 0.58
COL7A1-204ENST00000462475 MYSM1Q5VVJ2 828 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 KRT40Q6A162 431 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 VSIG10LQ86VR7 867 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 ARNTL2Q8WYA1 636 aa18.68■□□□□ 0.58
COL7A1-204ENST00000462475 U3KPZ7 1027 aaPredicted RBP18.68■□□□□ 0.58
COL7A1-204ENST00000462475 LCHNA4D1U4 455 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 KIF28PB7ZC32 967 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 GCOM1H8Y6P7 765 aaPredicted RBP18.67■□□□□ 0.58
COL7A1-204ENST00000462475 TLL1O43897 1013 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 CXCL10P02778 98 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 POLR2MP0CAP2 368 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 SP2Q02086 613 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 TROAPQ12815 778 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 TRAF7Q6Q0C0 670 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 RALYLQ86SE5 291 aaKnown RBP18.67■□□□□ 0.58
COL7A1-204ENST00000462475 FCHSD1Q86WN1 690 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 SPATA33Q96N06 139 aa18.67■□□□□ 0.58
COL7A1-204ENST00000462475 ERICH2A1L162 156 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 E7EWF7 191 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 GTPBP6O43824 516 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-204ENST00000462475 POU3F3P20264 500 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-204ENST00000462475 CCND2P30279 289 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 ANTXR2P58335 489 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 TFF2Q03403 129 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 PTK7Q13308 1070 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 WTAPQ15007 396 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 CNKSR3Q6P9H4 555 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 KCNV1Q6PIU1 500 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 SAMD3Q8N6K7 520 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 RUFY2Q8WXA3 655 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 UHRF1Q96T88 793 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-204ENST00000462475 TSPYL2Q9H2G4 693 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-204ENST00000462475 SUPT16HQ9Y5B9 1047 aaKnown RBP18.66■□□□□ 0.58
COL7A1-204ENST00000462475 PTPRSQ13332 1948 aa18.66■□□□□ 0.58
COL7A1-204ENST00000462475 PRRC2BQ5JSZ5 2229 aaKnown RBP18.65■□□□□ 0.58
COL7A1-204ENST00000462475 TRIP12Q14669 1992 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-204ENST00000462475 PPFIA4O75335 1185 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 PARNO95453 639 aaKnown RBP18.65■□□□□ 0.58
COL7A1-204ENST00000462475 MBTPS1Q14703 1052 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 SKIV2LQ15477 1246 aaKnown RBP18.65■□□□□ 0.58
COL7A1-204ENST00000462475 ZNF618Q5T7W0 954 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 NCOA7Q8NI08 942 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 PIBF1Q8WXW3 757 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 C16orf70Q9BSU1 422 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 BCAS3Q9H6U6 928 aa18.65■□□□□ 0.58
COL7A1-204ENST00000462475 PNMA6FA0A0J9YX94 578 aa18.64■□□□□ 0.57
COL7A1-204ENST00000462475 SGSM2O43147 1006 aa18.64■□□□□ 0.57
COL7A1-204ENST00000462475 TRAF1Q13077 416 aa18.64■□□□□ 0.57
COL7A1-204ENST00000462475 GRB10Q13322 594 aa18.64■□□□□ 0.57
COL7A1-204ENST00000462475 SART3Q15020 963 aaKnown RBP18.64■□□□□ 0.57
COL7A1-204ENST00000462475 IL27Q8NEV9 243 aa18.64■□□□□ 0.57
COL7A1-204ENST00000462475 NECAB3Q96P71 396 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-204ENST00000462475 FRMPD4Q14CM0 1322 aa18.64■□□□□ 0.57
COL7A1-204ENST00000462475 LPXNO60711 386 aa18.63■□□□□ 0.57
COL7A1-204ENST00000462475 TGFB3P10600 412 aa18.63■□□□□ 0.57
COL7A1-204ENST00000462475 MRPS9P82933 396 aaKnown RBP18.63■□□□□ 0.57
COL7A1-204ENST00000462475 CATIPQ7Z7H3 387 aa18.63■□□□□ 0.57
COL7A1-204ENST00000462475 MB21D2Q8IYB1 491 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-204ENST00000462475 ZBED2Q9BTP6 218 aa18.63■□□□□ 0.57
COL7A1-204ENST00000462475 MLXIPQ9HAP2 919 aa18.63■□□□□ 0.57
COL7A1-204ENST00000462475 BDP1A6H8Y1 2624 aa18.63■□□□□ 0.57
COL7A1-204ENST00000462475 ABHD14A-ACY1A0A1B0GW23 586 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 GJB5O95377 273 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 LGALS2P05162 132 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 BMP1P13497 986 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 KCNQ1P51787 676 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 IRX6P78412 446 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-204ENST00000462475 SEMA3FQ13275 785 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 SERINC5Q86VE9 423 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 IGDCC4Q8TDY8 1250 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 GDPD5Q8WTR4 605 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 MYL10Q9BUA6 226 aa18.62■□□□□ 0.57
COL7A1-204ENST00000462475 COL4A4P53420 1690 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-204ENST00000462475 BAZ2BQ9UIF8 2168 aaKnown RBP18.62■□□□□ 0.57
COL7A1-204ENST00000462475 LGR5O75473 907 aa18.61■□□□□ 0.57
COL7A1-204ENST00000462475 THPOP40225 353 aa18.61■□□□□ 0.57
COL7A1-204ENST00000462475 IKBKEQ14164 716 aa18.61■□□□□ 0.57
COL7A1-204ENST00000462475 GNPTABQ3T906 1256 aa18.61■□□□□ 0.57
COL7A1-204ENST00000462475 MAP4K1Q92918 833 aa18.61■□□□□ 0.57
COL7A1-204ENST00000462475 INPP4AQ96PE3 977 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-204ENST00000462475 RAD9AQ99638 391 aa18.61■□□□□ 0.57
COL7A1-204ENST00000462475 RBM8AQ9Y5S9 174 aaKnown RBP18.61■□□□□ 0.57
COL7A1-204ENST00000462475 C17orf102A2RUQ5 167 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 H3BRB1 525 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 EFCAB14O75071 495 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 SMIM10L2AP0DMW4 78 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 SMIM10L2BP0DMW5 78 aa18.6■□□□□ 0.57
COL7A1-204ENST00000462475 HOXC8P31273 242 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms