RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	HAUS3	Q68CZ6	603 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	TTBK2	Q6IQ55	1244 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	WDR93	Q6P2C0	686 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	SV2B	Q7L1I2	683 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	FAM184B	Q9ULE4	1060 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	RIMBP2	O15034	1052 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	SEMA3E	O15041	775 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	NONO	Q15233	471 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	VWA3B	Q502W6	1294 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	ALS2CR12	Q96Q35	445 aa		13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	SEC63	Q9UGP8	760 aa	Known RBP	13.83	□□□□□ -0.2
DDR1-238	ENST00000446312	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	UBR2	Q8IWV8	1755 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	STXBP3	O00186	592 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	DDB1	Q16531	1140 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	ECM1	Q16610	540 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	UBLCP1	Q8WVY7	318 aa	Predicted RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	DDX12P	Q92771	950 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	MXD3	Q9BW11	206 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	DDX47	Q9H0S4	455 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	GOPC	Q9HD26	462 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	GGT7	Q9UJ14	662 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	PARP4	Q9UKK3	1724 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	LDHB	P07195	334 aa	Known RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	CALCRL	Q16602	461 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	SHROOM1	Q2M3G4	852 aa	Predicted RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	ELMO3	Q96BJ8	720 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	TLR10	Q9BXR5	811 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	THAP9	Q9H5L6	903 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	SH2D4A	Q9H788	454 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	LRRC4C	Q9HCJ2	640 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	STIM2	Q9P246	746 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	COL5A2	P05997	1499 aa	Predicted RBP	13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	SHANK3	Q9BYB0	1731 aa		13.82	□□□□□ -0.2
DDR1-238	ENST00000446312	RHOBTB3	O94955	611 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CYP4A11	Q02928	519 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	KCTD1	Q719H9	257 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	OTUD6B	Q8N6M0	293 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	EYA3	Q99504	573 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	MMTAG2	Q9BU76	263 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	MYO1A	Q9UBC5	1043 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	EP400	Q96L91	3159 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	COL4A1	P02462	1669 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	ABCB4	P21439	1286 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CEP95	Q96GE4	821 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CELF4	Q9BZC1	486 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CCDC113	Q9H0I3	377 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CD248	Q9HCU0	757 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	KBTBD4	Q9NVX7	518 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	MKRN1	Q9UHC7	482 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	ATRN	O75882	1429 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312		A0A087X0T9	212 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CLIC2	O15247	247 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	KIAA0754	O94854	1291 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	FAM228B	P0C875	321 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	HDLBP	Q00341	1268 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	DHX9	Q08211	1270 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	NEK8	Q86SG6	692 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CEP57	Q86XR8	500 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	RDH13	Q8NBN7	331 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	TRIM58	Q8NG06	486 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	BRIP1	Q9BX63	1249 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	CPSF2	Q9P2I0	782 aa	Known RBP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	MYH6	P13533	1939 aa		13.81	□□□□□ -0.2
DDR1-238	ENST00000446312	EIF4E1B	A6NMX2	242 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	TMEM110-MUSTN1	A8MSY1	372 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L15	C9J2P7	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L13	C9JLJ4	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L11	C9JVI0	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L18	D6R9N7	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L22	D6RA61	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L17	D6RBQ6	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L19	D6RCP7	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L20	D6RJB6	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	CAND2	O75155	1236 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	CACNB3	P54284	484 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L24	Q0WX57	530 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	USP17L6P	Q6QN14	398 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	ELOA2	Q8IYF1	753 aa	Predicted RBP	13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	BUB1B	O60566	1050 aa	Predicted RBP	13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	PAX7	P23759	505 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	RBM5	P52756	815 aa	Known RBP eCLIP	13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	REXO1	Q8N1G1	1221 aa	Known RBP	13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	EHBP1	Q8NDI1	1231 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	CASKIN2	Q8WXE0	1202 aa		13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.8	□□□□□ -0.2
DDR1-238	ENST00000446312	ITGA4	P13612	1032 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	FLT3	P36888	993 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	KLHL30	Q0D2K2	578 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	GRB10	Q13322	594 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	KLHDC7A	Q5VTJ3	777 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	MAEA	Q7L5Y9	396 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	AMIGO3	Q86WK7	504 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	EFCAB13	Q8IY85	973 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	MDM1	Q8TC05	714 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	NOX5	Q96PH1	765 aa		13.79	□□□□□ -0.2
DDR1-238	ENST00000446312	TTYH3	Q9C0H2	523 aa		13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms