RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 KCNH7Q9NS40 1196 aa18.13■□□□□ 0.49
HMGA1-204ENST00000401473 SPATA31C2B4DYI2 1134 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 SLC37A4O43826 429 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 LY6KQ17RY6 165 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 GJC2Q5T442 439 aaPredicted RBP18.12■□□□□ 0.49
HMGA1-204ENST00000401473 MBOAT7Q96N66 472 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 NRBP1Q9UHY1 535 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 DOCK5Q9H7D0 1870 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 POTEFA5A3E0 1075 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 F13A1P00488 732 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 CCL5P13501 91 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 CNGA1P29973 690 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 ICAM3P32942 547 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 MTMR1Q13613 665 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 MYSM1Q5VVJ2 828 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 ANO1Q5XXA6 986 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 BRAPQ7Z569 592 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 ZSCAN16Q9H4T2 348 aaPredicted RBP18.12■□□□□ 0.49
HMGA1-204ENST00000401473 DDX41Q9UJV9 622 aaKnown RBP18.12■□□□□ 0.49
HMGA1-204ENST00000401473 PCDHB6Q9Y5E3 794 aa18.12■□□□□ 0.49
HMGA1-204ENST00000401473 SMPD1P17405 629 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 ZNF174Q15697 407 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 MOXD1Q6UVY6 613 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 PLA2G4DQ86XP0 818 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 GJA10Q969M2 543 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 LENG1Q96BZ8 264 aaPredicted RBP18.11■□□□□ 0.49
HMGA1-204ENST00000401473 GPRASP2Q96D09 838 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 RNF208Q9H0X6 261 aa18.11■□□□□ 0.49
HMGA1-204ENST00000401473 SEPT4O43236 478 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 TXNP10599 105 aaKnown RBP18.1■□□□□ 0.49
HMGA1-204ENST00000401473 TGFB3P10600 412 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 TRAPPC10P48553 1259 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 GNPTABQ3T906 1256 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 Q4G0T1 1027 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 IQSEC1Q6DN90 963 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 NIPA1Q7RTP0 329 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 SCFD2Q8WU76 684 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 COPS5Q92905 334 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 HMX1Q9NP08 348 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-204ENST00000401473 PAK6Q9NQU5 681 aaPredicted RBP18.1■□□□□ 0.49
HMGA1-204ENST00000401473 DDX25Q9UHL0 483 aaKnown RBP18.1■□□□□ 0.49
HMGA1-204ENST00000401473 MRVI1Q9Y6F6 885 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 TCHHQ07283 1943 aa18.1■□□□□ 0.49
HMGA1-204ENST00000401473 MSH4O15457 936 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 MAFGO15525 162 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 FIBPO43427 364 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 MCM7P33993 719 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 TNFAIP2Q03169 654 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 FOXD4L6Q3SYB3 417 aaPredicted RBP18.09■□□□□ 0.49
HMGA1-204ENST00000401473 RILPL1Q5EBL4 403 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 TTC38Q5R3I4 469 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 FOXD4L3Q6VB84 417 aaPredicted RBP18.09■□□□□ 0.49
HMGA1-204ENST00000401473 NLRX1Q86UT6 975 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 FAM184BQ9ULE4 1060 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 GNEQ9Y223 722 aaKnown RBP18.09■□□□□ 0.49
HMGA1-204ENST00000401473 KCNA2P16389 499 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 IRX5P78411 483 aaPredicted RBP18.09■□□□□ 0.49
HMGA1-204ENST00000401473 TTLL4Q14679 1199 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 DUSP28Q4G0W2 176 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 LHX8Q68G74 356 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 POTEDQ86YR6 584 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 HAS1Q92839 578 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 CHAMP1Q96JM3 812 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 FTOQ9C0B1 505 aaKnown RBP eCLIP18.09■□□□□ 0.49
HMGA1-204ENST00000401473 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.09■□□□□ 0.491e-11■■■■■ 50.4
HMGA1-204ENST00000401473 TMEM60Q9H2L4 133 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 AGO4Q9HCK5 861 aaKnown RBP18.09■□□□□ 0.49
HMGA1-204ENST00000401473 TELO2Q9Y4R8 837 aa18.09■□□□□ 0.49
HMGA1-204ENST00000401473 AKR1A1P14550 325 aa18.08■□□□□ 0.49
HMGA1-204ENST00000401473 GCFC2P16383 781 aaKnown RBP18.08■□□□□ 0.49
HMGA1-204ENST00000401473 ITGB3BPQ13352 177 aaPredicted RBP18.08■□□□□ 0.49
HMGA1-204ENST00000401473 C4orf32Q8N8J7 132 aa18.08■□□□□ 0.49
HMGA1-204ENST00000401473 ETNPPLQ8TBG4 499 aa18.08■□□□□ 0.49
HMGA1-204ENST00000401473 PKD2L1Q9P0L9 805 aa18.08■□□□□ 0.49
HMGA1-204ENST00000401473 NOL7Q9UMY1 257 aaKnown RBP18.08■□□□□ 0.49
HMGA1-204ENST00000401473 IPO5O00410 1097 aaKnown RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 DHX15O43143 795 aaKnown RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 SORBS3O60504 671 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 UBA1P22314 1058 aaKnown RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 DEFB118Q96PH6 123 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 SENP7Q9BQF6 1050 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 KCNMB3Q9NPA1 279 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 NUCB2P80303 420 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 SETQ01105 290 aaPredicted RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 KCNV1Q6PIU1 500 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 CDHR1Q96JP9 859 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 MTMR9Q96QG7 549 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 ZNF577Q9BSK1 485 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 TFIP11Q9UBB9 837 aaKnown RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 DDX20Q9UHI6 824 aaKnown RBP18.07■□□□□ 0.48
HMGA1-204ENST00000401473 CLIC4Q9Y696 253 aa18.07■□□□□ 0.48
HMGA1-204ENST00000401473 PTGDRQ13258 359 aa18.06■□□□□ 0.48
HMGA1-204ENST00000401473 CYFIP1Q7L576 1253 aa18.06■□□□□ 0.48
HMGA1-204ENST00000401473 USP28Q96RU2 1077 aa18.06■□□□□ 0.48
HMGA1-204ENST00000401473 NAP1L4Q99733 375 aaKnown RBP18.06■□□□□ 0.48
HMGA1-204ENST00000401473 DYNC1LI2O43237 492 aaPredicted RBP18.05■□□□□ 0.48
HMGA1-204ENST00000401473 NEMFO60524 1076 aa18.05■□□□□ 0.48
HMGA1-204ENST00000401473 DUSP11O75319 330 aaKnown RBP18.05■□□□□ 0.48
HMGA1-204ENST00000401473 GGPS1O95749 300 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms