RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 POLR2MP0CAP2 368 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 ANTXR2P58335 489 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 KIAA0753Q2KHM9 967 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 CELF3Q5SZQ8 465 aaKnown RBP16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 LRRC8DQ7L1W4 858 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 HERC6Q8IVU3 1022 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 TRANK1O15050 2925 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 MICAL3Q7RTP6 2002 aa16.76■□□□□ 0.27
PRPF40A-201ENST00000354363 SORBS3O60504 671 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 ARHGEF15O94989 841 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 GGPS1O95749 300 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 CKBP12277 381 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 CCND2P30279 289 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 IRX6P78412 446 aaPredicted RBP16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 SP2Q02086 613 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 SART3Q15020 963 aaKnown RBP16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 HSDL1Q3SXM5 330 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 FCHSD1Q86WN1 690 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 IGDCC4Q8TDY8 1250 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 GPKOWQ92917 476 aaPredicted RBP eCLIP16.75■□□□□ 0.274e-6■■□□□ 11.8
PRPF40A-201ENST00000354363 ZFP91Q96JP5 570 aaPredicted RBP16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 SPATA33Q96N06 139 aa16.75■□□□□ 0.27
PRPF40A-201ENST00000354363 NCOR1O75376 2440 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 KIF28PB7ZC32 967 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 RFXAPO00287 272 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 PPFIA4O75335 1185 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 PARNO95453 639 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 TGFB3P10600 412 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 UBA1P22314 1058 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 PTK7Q13308 1070 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 MB21D2Q8IYB1 491 aaPredicted RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 MAP4K1Q92918 833 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 ASB2Q96Q27 587 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 CERS4Q9HA82 394 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 COL4A4P53420 1690 aaPredicted RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 EPOPA6NHQ4 379 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 NBNO60934 754 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 CXCL10P02778 98 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 KCNJ6P48051 423 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 WDR5P61964 334 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 ZNF200P98182 395 aaPredicted RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 TAP1Q03518 808 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 TRIM71Q2Q1W2 868 aaKnown RBP16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 CNKSR3Q6P9H4 555 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 CATIPQ7Z7H3 387 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 MICALL1Q8N3F8 863 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 WNT8BQ93098 351 aa16.74■□□□□ 0.27
PRPF40A-201ENST00000354363 MUC3AQ02505 3323 aa16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 MRPS5P82675 430 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 HIC1Q14526 733 aa16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 TCTN1Q2MV58 587 aa16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 TRAF7Q6Q0C0 670 aa16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 PIBF1Q8WXW3 757 aa16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 C16orf70Q9BSU1 422 aa16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 RBM8AQ9Y5S9 174 aaKnown RBP16.73■□□□□ 0.27
PRPF40A-201ENST00000354363 SIP14410 1827 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 FRMPD4Q14CM0 1322 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 POU3F3P20264 500 aaPredicted RBP16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 DEFB103AP81534 67 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 MRPS9P82933 396 aaKnown RBP16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 ZNF618Q5T7W0 954 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 BCAS3Q9H6U6 928 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 MLXIPQ9HAP2 919 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 LY9Q9HBG7 655 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 MTCH2Q9Y6C9 303 aa16.72■□□□□ 0.27
PRPF40A-201ENST00000354363 RBAK-RBAKDNI3L0D1 243 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 TNFRSF10AO00220 468 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 TLL1O43897 1013 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 TMCO2Q7Z6W1 182 aaPredicted RBP16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 ZNF654Q8IZM8 581 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 ARNTL2Q8WYA1 636 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 MAP3K14Q99558 947 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 MYL10Q9BUA6 226 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 SPZ1Q9BXG8 430 aa16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 TSPYL2Q9H2G4 693 aaPredicted RBP16.71■□□□□ 0.27
PRPF40A-201ENST00000354363 ABHD14A-ACY1A0A1B0GW23 586 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 GTPBP6O43824 516 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 DDAH1O94760 285 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 ICAM3P32942 547 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 MBTPS1Q14703 1052 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 GNPTABQ3T906 1256 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 SPRED2Q7Z698 418 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 INPP4AQ96PE3 977 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 LCHNA4D1U4 455 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 H3BRB1 525 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 STAM2O75886 525 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 LGALS2P05162 132 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 SEMA3FQ13275 785 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 KRT40Q6A162 431 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 SERINC5Q86VE9 423 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 CTCFLQ8NI51 663 aaPredicted RBP16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 ADAMTS19Q8TE59 1207 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 MTA3Q9BTC8 594 aa16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 TUT1Q9H6E5 874 aaKnown RBP16.7■□□□□ 0.26
PRPF40A-201ENST00000354363 SPATA31C2B4DYI2 1134 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 SMARCA1P28370 1054 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 HOXC8P31273 242 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 IKBKEQ14164 716 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 CASC1Q6TDU7 716 aa16.69■□□□□ 0.26
PRPF40A-201ENST00000354363 RRP36Q96EU6 259 aaKnown RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms