RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 SNRNP48Q6IEG0 339 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 BHMT2Q9H2M3 363 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 PCIF1Q9H4Z3 704 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 DDX41Q9UJV9 622 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 FEM1BQ9UK73 627 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 MAN2A1Q16706 1144 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 NME8Q8N427 588 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 NLRP4Q96MN2 994 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 NXF1Q9UBU9 619 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 SPDYE16A6NNV3 312 aaPredicted RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 KRIT1O00522 736 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 VPS41P49754 854 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 SPDYE2Q495Y8 402 aa20.21■□□□□ 0.83
PCDH1-201ENST00000287008 SRPRBQ9Y5M8 271 aaKnown RBP20.21■□□□□ 0.83
PCDH1-201ENST00000287008 SRGAP2CP0DJJ0 459 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 U2AF2P26368 475 aaKnown RBP eCLIP20.2■□□□□ 0.82
PCDH1-201ENST00000287008 ITKQ08881 620 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 RCSD1Q6JBY9 416 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 IFT122Q9HBG6 1241 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 RNF146Q9NTX7 359 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 A6NJR5 290 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 MARK3P27448 753 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 MXI1P50539 228 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 GRK7Q8WTQ7 553 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 FAM84BQ96KN1 310 aaPredicted RBP20.2■□□□□ 0.82
PCDH1-201ENST00000287008 PCDHB6Q9Y5E3 794 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 PLCG1P19174 1290 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 LMNB1P20700 586 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 SURF1Q15526 300 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 C17orf53Q8N3J3 647 aaPredicted RBP20.2■□□□□ 0.82
PCDH1-201ENST00000287008 C7orf31Q8N865 590 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 NSUN6Q8TEA1 469 aaKnown RBP20.2■□□□□ 0.82
PCDH1-201ENST00000287008 DDX23Q9BUQ8 820 aaKnown RBP20.2■□□□□ 0.82
PCDH1-201ENST00000287008 SH3GLB2Q9NR46 395 aa20.2■□□□□ 0.82
PCDH1-201ENST00000287008 BUB1O43683 1085 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 CHRNA5P30532 468 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 CATSPER4Q7RTX7 472 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 RAVER2Q9HCJ3 691 aaKnown RBP20.19■□□□□ 0.82
PCDH1-201ENST00000287008 ALCAMQ13740 583 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 KRT71Q3SY84 523 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 ZNF658Q5TYW1 1059 aaPredicted RBP20.19■□□□□ 0.82
PCDH1-201ENST00000287008 PRPF38AQ8NAV1 312 aaKnown RBP20.19■□□□□ 0.82
PCDH1-201ENST00000287008 CEP95Q96GE4 821 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 MTA3Q9BTC8 594 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 F5H6K3 240 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 KLRC3Q07444 240 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 MYO1EQ12965 1108 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 PALM2Q8IXS6 379 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 ANKRD13CQ8N6S4 541 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 P3H4Q92791 437 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 FAM167AQ96KS9 214 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 HERC5Q9UII4 1024 aaKnown RBP20.19■□□□□ 0.82
PCDH1-201ENST00000287008 SUGT1Q9Y2Z0 365 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 HOXA7P31268 230 aaPredicted RBP20.19■□□□□ 0.82
PCDH1-201ENST00000287008 ERCC6LQ2NKX8 1250 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 BBS5Q8N3I7 341 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 OTUD5Q96G74 571 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 CRAMP1Q96RY5 1269 aa20.19■□□□□ 0.82
PCDH1-201ENST00000287008 JAK3P52333 1124 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 OSTNP61366 133 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 PSMD2Q13200 908 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 CCNE1P24864 410 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 ADCY8P40145 1251 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 BFSP1Q12934 665 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 PTPROQ16827 1216 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 SMYD4Q8IYR2 804 aaPredicted RBP20.18■□□□□ 0.82
PCDH1-201ENST00000287008 ZNRF3Q9ULT6 936 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 PCDHA6Q9UN73 950 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 PCDHA8Q9Y5H6 950 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 IQGAP3Q86VI3 1631 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 THAP12O43422 761 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 FDX1P10109 184 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 MTMR1Q13613 665 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 TRIM11Q96F44 468 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 FTOQ9C0B1 505 aaKnown RBP eCLIP20.18■□□□□ 0.82
PCDH1-201ENST00000287008 ZNF148Q9UQR1 794 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 MNAT1P51948 309 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 CTTNQ14247 550 aaKnown RBP20.18■□□□□ 0.82
PCDH1-201ENST00000287008 TBC1D10CQ8IV04 446 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 GIMAP8Q8ND71 665 aaPredicted RBP20.18■□□□□ 0.82
PCDH1-201ENST00000287008 CHAMP1Q96JM3 812 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 LRRC4Q9HBW1 653 aa20.18■□□□□ 0.82
PCDH1-201ENST00000287008 RNF17Q9BXT8 1623 aaKnown RBP20.17■□□□□ 0.82
PCDH1-201ENST00000287008 GNAT1P11488 350 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 DENND2CQ68D51 928 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 ZBTB33Q86T24 672 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 PPP1R16BQ96T49 567 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 MCPH1Q8NEM0 835 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 KRT12Q99456 494 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 ADGRB3O60242 1522 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 RIOK3O14730 519 aaKnown RBP20.17■□□□□ 0.82
PCDH1-201ENST00000287008 PFDN6O15212 129 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 R3HDM1Q15032 1099 aaKnown RBP20.17■□□□□ 0.82
PCDH1-201ENST00000287008 TCP11Q8WWU5 503 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 LRRN2O75325 713 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 ALX1Q15699 326 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 WHAMMP3Q1A5X7 153 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 SLFN12LQ6IEE8 588 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 PPP1R2P3Q6NXS1 205 aa20.17■□□□□ 0.82
PCDH1-201ENST00000287008 A6NNZ2 444 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms