RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 MRFAP1L1Q96HT8 127 aa20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 ACCSQ96QU6 501 aa20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 ZNF341Q9BYN7 854 aa20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 ESYT2A0FGR8 921 aa20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 FAM71BQ8TC56 605 aa20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 SNX25Q9H3E2 840 aa20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 ZNF277Q9NRM2 450 aaPredicted RBP20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 DNAJC17Q9NVM6 304 aaKnown RBP20.32■□□□□ 0.84
SMARCC1-201ENST00000254480 BNIP3LO60238 219 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 TSNAXIP1Q2TAA8 658 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 PIGOQ8TEQ8 1089 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 GSDMAQ96QA5 445 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 TBK1Q9UHD2 729 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 PRR36Q9H6K5 1346 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 CCND2P30279 289 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 ARHGAP25P42331 645 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 SLCO1A2P46721 670 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 ZKSCAN8Q15776 578 aaPredicted RBP20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 ZSCAN26Q16670 478 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 RNF10Q8N5U6 811 aaKnown RBP20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 PPME1Q9Y570 386 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 MCAMP43121 646 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 AOC3Q16853 763 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 LINC00301Q8NCQ3 95 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 CALN1Q9BXU9 219 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 CAPS2Q9BXY5 557 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 EPB41L5Q9HCM4 733 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 MMP10P09238 476 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 CEP120Q8N960 986 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 NMT2O60551 498 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 BBOX1O75936 387 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 PLTPP55058 493 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 PDE1BQ01064 536 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 BCAS4Q8TDM0 211 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 CHMP6Q96FZ7 201 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 RPGRIP1Q96KN7 1286 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 FAM49AQ9H0Q0 323 aaPredicted RBP20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 HOMER3Q9NSC5 361 aa20.31■□□□□ 0.84
SMARCC1-201ENST00000254480 SAMD9Q5K651 1589 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 ABCA5Q8WWZ7 1642 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 CYP27A1Q02318 531 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 FOXD4Q12950 439 aaPredicted RBP20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 ZNF658Q5TYW1 1059 aaPredicted RBP20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 SLC38A10Q9HBR0 1119 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 IL1RL1Q01638 556 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 PDZD4Q76G19 769 aaPredicted RBP20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 RIPOR2Q9Y4F9 1068 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 ERBB3P21860 1342 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 RNF123Q5XPI4 1314 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 PASKQ96RG2 1323 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 PLA2G4BP0C869 781 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 ZNF668Q96K58 619 aaPredicted RBP20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 GPR108Q9NPR9 543 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 POLR3EQ9NVU0 708 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 ATP10DQ9P241 1426 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 ATP8A1Q9Y2Q0 1164 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 HEG1Q9ULI3 1381 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 EFCAB8A8MWE9 144 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 RETREG2Q8NC44 543 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 EMILIN3Q9NT22 766 aa20.3■□□□□ 0.84
SMARCC1-201ENST00000254480 A0A1W2PQ27 194 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 A0A1W2PQ64 194 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 A0A1W2PQD8 194 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 WDR46O15213 610 aaKnown RBP20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 PPFIA4O75335 1185 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 PCP11498 1178 aaKnown RBP20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 SEPT6Q14141 434 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 RCN2Q14257 317 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 TMTC4Q5T4D3 741 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 JADE1Q6IE81 842 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 SMAP1Q8IYB5 467 aaPredicted RBP20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 PI4KBQ9UBF8 816 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 LRFN2Q9ULH4 789 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 GH2P01242 217 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 LMNB1P20700 586 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 CDO1Q16878 200 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 SEPT12Q8IYM1 358 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 KRT1P04264 644 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 LIG3P49916 1009 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 CCNA1P78396 465 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 EPHA10Q5JZY3 1008 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 TTLL11Q8NHH1 800 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 ARAP3Q8WWN8 1544 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 ZNF394Q53GI3 561 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 PDXDC2PQ6P474 469 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 SMIM5Q71RC9 77 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 ABT1Q9ULW3 272 aaKnown RBP20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 PBRM1Q86U86 1689 aa20.29■□□□□ 0.84
SMARCC1-201ENST00000254480 SLC7A5Q01650 507 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 NACC1Q96RE7 527 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 ZNF335Q9H4Z2 1342 aaPredicted RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 INHBAP08476 426 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 USP14P54578 494 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 BASP1P80723 227 aaKnown RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 SGO2Q562F6 1265 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 OR6B2Q6IFH4 312 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 CACTINQ8WUQ7 758 aaKnown RBP20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 VCXQ9H320 206 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 CEP170Q5SW79 1584 aa20.28■□□□□ 0.84
SMARCC1-201ENST00000254480 PRDX5P30044 214 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms