RNA–Protein interactions for RNA: ENST00000233468.4

SF3B6-201, Transcript of splicing factor 3b subunit 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B6, Length 770 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B6-201ENST00000233468 KBTBD13C9JR72 458 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 ZEB2O60315 1214 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 EIF2AK2P19525 551 aaKnown RBP12.92□□□□□ -0.34
SF3B6-201ENST00000233468 AP3B2Q13367 1082 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 TTLL4Q14679 1199 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 ME3Q16798 604 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 GNPTABQ3T906 1256 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 BRDTQ58F21 947 aaPredicted RBP12.92□□□□□ -0.34
SF3B6-201ENST00000233468 GALNT17Q6IS24 598 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 SLC39A5Q6ZMH5 540 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 EEPD1Q7L9B9 569 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 FERMT2Q96AC1 680 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 GUCD1Q96NT3 240 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 KIF2CQ99661 725 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 PDCD2LQ9BRP1 358 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 AP5M1Q9H0R1 490 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 CDH23Q9H251 3354 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 COL20A1Q9P218 1284 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 Q9Y3F1 56 aa12.92□□□□□ -0.34
SF3B6-201ENST00000233468 ASTN1O14525 1302 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 STK36Q9NRP7 1315 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 VCANP13611 3396 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 MCM3APO60318 1980 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 MEIS2O14770 477 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 MYCLP12524 364 aaPredicted RBP12.91□□□□□ -0.34
SF3B6-201ENST00000233468 ADCYAP1R1P41586 468 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 PGM5Q15124 567 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 SHHQ15465 462 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 C9orf50Q5SZB4 431 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 USP17L6PQ6QN14 398 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 SH3RF1Q7Z6J0 888 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 VSIG10LQ86VR7 867 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 FBXO16Q8IX29 292 aaPredicted RBP12.91□□□□□ -0.34
SF3B6-201ENST00000233468 PCSK9Q8NBP7 692 aaKnown RBP12.91□□□□□ -0.34
SF3B6-201ENST00000233468 LBHD1Q9BQE6 289 aaPredicted RBP12.91□□□□□ -0.34
SF3B6-201ENST00000233468 WDR11Q9BZH6 1224 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 KATNBL1Q9H079 304 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 ZMYND12Q9H0C1 365 aa12.91□□□□□ -0.34
SF3B6-201ENST00000233468 RBM47A0AV96 593 aaKnown RBP12.9□□□□□ -0.34
SF3B6-201ENST00000233468 TGFB3P10600 412 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 NLRP5P59047 1200 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 LRRC41Q15345 812 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 PKN1Q16512 942 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 TRIM60Q495X7 471 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 DUSP28Q4G0W2 176 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 TAPT1Q6NXT6 567 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 NLRX1Q86UT6 975 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 REXO1Q8N1G1 1221 aaKnown RBP12.9□□□□□ -0.34
SF3B6-201ENST00000233468 CDHR1Q96JP9 859 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 LLPHQ9BRT6 129 aaKnown RBP12.9□□□□□ -0.34
SF3B6-201ENST00000233468 TSEN34Q9BSV6 310 aaKnown RBP12.9□□□□□ -0.34
SF3B6-201ENST00000233468 ORC3Q9UBD5 711 aaPredicted RBP12.9□□□□□ -0.34
SF3B6-201ENST00000233468 PCDHA6Q9UN73 950 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 PCDHA8Q9Y5H6 950 aa12.9□□□□□ -0.34
SF3B6-201ENST00000233468 TRIM43BA6NCK2 446 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 TXNP10599 105 aaKnown RBP12.89□□□□□ -0.35
SF3B6-201ENST00000233468 GJA9P57773 515 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 HMGN5P82970 282 aaKnown RBP12.89□□□□□ -0.35
SF3B6-201ENST00000233468 TRIM29Q14134 588 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 PCNX4Q63HM2 1172 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 SEPT14Q6ZU15 432 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 NECAB1Q8N987 351 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 BADQ92934 168 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 TRIM43Q96BQ3 446 aaPredicted RBP12.89□□□□□ -0.35
SF3B6-201ENST00000233468 BRMS1Q9HCU9 246 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 PRDM5Q9NQX1 630 aaPredicted RBP12.89□□□□□ -0.35
SF3B6-201ENST00000233468 KIF3AQ9Y496 699 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 MRVI1Q9Y6F6 885 aa12.89□□□□□ -0.35
SF3B6-201ENST00000233468 FRMPD4Q14CM0 1322 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 MOXD2PA6NHM9 499 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 MAFGO15525 162 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 DYNC1LI2O43237 492 aaPredicted RBP12.88□□□□□ -0.35
SF3B6-201ENST00000233468 PGK1P00558 417 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 C6orf222P0C671 652 aaPredicted RBP12.88□□□□□ -0.35
SF3B6-201ENST00000233468 SMPD1P17405 629 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 ITGB8P26012 769 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 CPT1AP50416 773 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 UBE2SQ16763 222 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 GNASQ5JWF2 1037 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 TYW1BQ6NUM6 668 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 TLK2Q86UE8 772 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 LENG1Q96BZ8 264 aaPredicted RBP12.88□□□□□ -0.35
SF3B6-201ENST00000233468 UPF3AQ9H1J1 476 aaKnown RBP12.88□□□□□ -0.35
SF3B6-201ENST00000233468 PDLIM7Q9NR12 457 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 PDGFCQ9NRA1 345 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 VPS54Q9P1Q0 977 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 PRKAG2Q9UGJ0 569 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 PCDHA4Q9UN74 947 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 GNEQ9Y223 722 aaKnown RBP12.88□□□□□ -0.35
SF3B6-201ENST00000233468 SYNRGQ9UMZ2 1314 aa12.88□□□□□ -0.35
SF3B6-201ENST00000233468 FIBPO43427 364 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 KPNA6O60684 536 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 PPFIA3O75145 1194 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 ADAMTS4O75173 837 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 CABYRO75952 493 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 GH1P01241 217 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 CST5P28325 142 aaPredicted RBP12.87□□□□□ -0.35
SF3B6-201ENST00000233468 ZNF76P36508 570 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 NKX3-2P78367 333 aa12.87□□□□□ -0.35
SF3B6-201ENST00000233468 LAMC2Q13753 1193 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms