RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YHR054CP38780 354 aa3.2□□□□□ -1.9
UPF3YGR072W PCL6P40038 420 aa3.2□□□□□ -1.9
UPF3YGR072W FET5P43561 622 aa3.2□□□□□ -1.9
UPF3YGR072W CUL3P53202 744 aa3.2□□□□□ -1.9
UPF3YGR072W BUD32P53323 261 aa3.2□□□□□ -1.9
UPF3YGR072W RPT4P53549 437 aaKnown RBP3.2□□□□□ -1.9
UPF3YGR072W YLR281CQ05863 155 aa3.2□□□□□ -1.9
UPF3YGR072W AEP3Q12089 606 aa3.2□□□□□ -1.9
UPF3YGR072W LEU4P06208 619 aaKnown RBP3.19□□□□□ -1.9
UPF3YGR072W SPO7P18410 259 aa3.19□□□□□ -1.9
UPF3YGR072W ATP10P18496 279 aa3.19□□□□□ -1.9
UPF3YGR072W SNT1P25357 1226 aa3.19□□□□□ -1.9
UPF3YGR072W FUN19P28003 413 aaPredicted RBP3.19□□□□□ -1.9
UPF3YGR072W PUP2P32379 260 aa3.19□□□□□ -1.9
UPF3YGR072W RPN2P32565 945 aaKnown RBP3.19□□□□□ -1.9
UPF3YGR072W YND1P40009 630 aa3.19□□□□□ -1.9
UPF3YGR072W YTA12P40341 825 aa3.19□□□□□ -1.9
UPF3YGR072W CSM2P40465 213 aa3.19□□□□□ -1.9
UPF3YGR072W VMA13P41807 478 aaKnown RBP3.19□□□□□ -1.9
UPF3YGR072W RPS0BP46654 252 aaKnown RBP3.19□□□□□ -1.9
UPF3YGR072W GPI1P53306 609 aa3.19□□□□□ -1.9
UPF3YGR072W EOS1P53938 366 aa3.19□□□□□ -1.9
UPF3YGR072W SAM50P53969 484 aa3.19□□□□□ -1.9
UPF3YGR072W ACL4Q03771 387 aa3.19□□□□□ -1.9
UPF3YGR072W MSS11Q03825 758 aa3.19□□□□□ -1.9
UPF3YGR072W YDR415CQ04033 374 aaPredicted RBP3.19□□□□□ -1.9
UPF3YGR072W IVY1Q04934 453 aa3.19□□□□□ -1.9
UPF3YGR072W HEL2Q05580 639 aaKnown RBP3.19□□□□□ -1.9
UPF3YGR072W APL5Q08951 932 aaKnown RBP3.19□□□□□ -1.9
UPF3YGR072W VAM3Q12241 283 aa3.19□□□□□ -1.9
UPF3YGR072W SUC2P00724 532 aa3.18□□□□□ -1.9
UPF3YGR072W RIP1P08067 215 aa3.18□□□□□ -1.9
UPF3YGR072W BAR1P12630 587 aa3.18□□□□□ -1.9
UPF3YGR072W GLK1P17709 500 aaKnown RBP3.18□□□□□ -1.9
UPF3YGR072W CLN1P20437 546 aa3.18□□□□□ -1.9
UPF3YGR072W SGV1P23293 657 aaKnown RBP3.18□□□□□ -1.9
UPF3YGR072W YCR007CP25354 239 aa3.18□□□□□ -1.9
UPF3YGR072W MGR1P25573 417 aa3.18□□□□□ -1.9
UPF3YGR072W KRE2P27809 442 aa3.18□□□□□ -1.9
UPF3YGR072W HIR2P32480 875 aa3.18□□□□□ -1.9
UPF3YGR072W SWH1P35845 1188 aa3.18□□□□□ -1.9
UPF3YGR072W THI2P38141 450 aa3.18□□□□□ -1.9
UPF3YGR072W GDT1P38301 280 aaPredicted RBP3.18□□□□□ -1.9
UPF3YGR072W CAJ1P39101 391 aa3.18□□□□□ -1.9
UPF3YGR072W TFG2P41896 400 aaPredicted RBP3.18□□□□□ -1.9
UPF3YGR072W YJL132WP47014 750 aa3.18□□□□□ -1.9
UPF3YGR072W DSL1P53847 754 aa3.18□□□□□ -1.9
UPF3YGR072W DIC1Q06143 298 aa3.18□□□□□ -1.9
UPF3YGR072W DCS1Q06151 350 aa3.18□□□□□ -1.9
UPF3YGR072W MMR1Q06324 491 aa3.18□□□□□ -1.9
UPF3YGR072W YEH2Q07950 538 aa3.18□□□□□ -1.9
UPF3YGR072W LSP1Q12230 341 aaKnown RBP3.18□□□□□ -1.9
UPF3YGR072W RPN5Q12250 445 aaKnown RBP3.18□□□□□ -1.9
UPF3YGR072W MES1P00958 751 aaKnown RBP3.17□□□□□ -1.9
UPF3YGR072W SEC62P21825 274 aa3.17□□□□□ -1.9
UPF3YGR072W ATP11P32453 318 aa3.17□□□□□ -1.9
UPF3YGR072W RRP1P35178 278 aaPredicted RBP3.17□□□□□ -1.9
UPF3YGR072W RSM22P36056 628 aa3.17□□□□□ -1.9
UPF3YGR072W YBR139WP38109 508 aa3.17□□□□□ -1.9
UPF3YGR072W YER130CP39959 443 aa3.17□□□□□ -1.9
UPF3YGR072W ATP22P50273 684 aaPredicted RBP3.17□□□□□ -1.9
UPF3YGR072W ESBP6P53918 673 aa3.17□□□□□ -1.9
UPF3YGR072W HSP31Q04432 237 aa3.17□□□□□ -1.9
UPF3YGR072W YMR254CQ04838 102 aa3.17□□□□□ -1.9
UPF3YGR072W PHO92Q06390 306 aa3.17□□□□□ -1.9
UPF3YGR072W DIS3Q08162 1001 aaKnown RBP3.17□□□□□ -1.9
UPF3YGR072W THI20Q08224 551 aa3.17□□□□□ -1.9
UPF3YGR072W MTR10Q99189 972 aa3.17□□□□□ -1.9
UPF3YGR072W CAR1P00812 333 aaKnown RBP3.16□□□□□ -1.9
UPF3YGR072W RPL6BP05739 176 aaKnown RBP3.16□□□□□ -1.9
UPF3YGR072W PDE2P06776 526 aa3.16□□□□□ -1.9
UPF3YGR072W RHB1P25378 209 aa3.16□□□□□ -1.9
UPF3YGR072W BEM1P29366 551 aa3.16□□□□□ -1.9
UPF3YGR072W ACH1P32316 526 aa3.16□□□□□ -1.9
UPF3YGR072W PRP21P32524 280 aaPredicted RBP3.16□□□□□ -1.9
UPF3YGR072W ECM15P35195 104 aa3.16□□□□□ -1.9
UPF3YGR072W SPC34P36131 295 aa3.16□□□□□ -1.9
UPF3YGR072W OSH3P38713 996 aaKnown RBP3.16□□□□□ -1.9
UPF3YGR072W SYG1P40528 902 aa3.16□□□□□ -1.9
UPF3YGR072W ELP2P42935 788 aa3.16□□□□□ -1.9
UPF3YGR072W DRN1P53255 507 aaKnown RBP3.16□□□□□ -1.9
UPF3YGR072W TDA7P53882 636 aaPredicted RBP3.16□□□□□ -1.9
UPF3YGR072W RPL6AQ02326 176 aaKnown RBP3.16□□□□□ -1.9
UPF3YGR072W SLD5Q03406 294 aa3.16□□□□□ -1.9
UPF3YGR072W FMP42Q04991 504 aa3.16□□□□□ -1.9
UPF3YGR072W VPS74Q06385 345 aa3.16□□□□□ -1.9
UPF3YGR072W UAF30Q08747 228 aa3.16□□□□□ -1.9
UPF3YGR072W RKM1Q08961 583 aaPredicted RBP3.16□□□□□ -1.9
UPF3YGR072W BUG1Q12191 341 aa3.16□□□□□ -1.9
UPF3YGR072W SKS1Q12505 502 aa3.16□□□□□ -1.9
UPF3YGR072W YLR278CQ05854 1341 aa3.16□□□□□ -1.9
UPF3YGR072W YML002WP0CF17 737 aa3.15□□□□□ -1.91
UPF3YGR072W RPL1AP0CX43 217 aaKnown RBP3.15□□□□□ -1.91
UPF3YGR072W RPL1BP0CX44 217 aaKnown RBP3.15□□□□□ -1.91
UPF3YGR072W RRP7P25368 297 aaPredicted RBP3.15□□□□□ -1.91
UPF3YGR072W RPS2P25443 254 aaKnown RBP3.15□□□□□ -1.91
UPF3YGR072W SIN4P32259 974 aa3.15□□□□□ -1.91
UPF3YGR072W RAD24P32641 659 aa3.15□□□□□ -1.91
UPF3YGR072W TRS65P32893 560 aa3.15□□□□□ -1.91
UPF3YGR072W EFM2P38347 419 aa3.15□□□□□ -1.91
Retrieved 100 of 5,963 RNA–protein pairs in 10.5 ms