RNA–Protein interactions for RNA: YER100W

UBC6, Transcript of Ubiquitin-conjugating enzyme involved in ERAD, yeast

Gene UBC6, Length 753 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC6	YER100W	BPL1	P48445	690 aa	Predicted RBP	4.94	□□□□□ -1.62
UBC6	YER100W	AQR1	P53943	586 aa		4.94	□□□□□ -1.62
UBC6	YER100W	ARP5	P53946	755 aa		4.94	□□□□□ -1.62
UBC6	YER100W	OCA2	P53949	197 aa		4.94	□□□□□ -1.62
UBC6	YER100W	YVH1	Q02256	364 aa	Known RBP	4.94	□□□□□ -1.62
UBC6	YER100W	CAC2	Q04199	468 aa		4.94	□□□□□ -1.62
UBC6	YER100W	RRB1	Q04225	511 aa	Known RBP	4.94	□□□□□ -1.62
UBC6	YER100W	RBA50	Q04418	439 aa		4.94	□□□□□ -1.62
UBC6	YER100W	MDY2	Q12285	212 aa		4.94	□□□□□ -1.62
UBC6	YER100W	RRP36	Q12481	300 aa	Predicted RBP	4.94	□□□□□ -1.62
UBC6	YER100W	ADE4	P04046	510 aa	Known RBP	4.93	□□□□□ -1.62
UBC6	YER100W	PDE2	P06776	526 aa		4.93	□□□□□ -1.62
UBC6	YER100W	RHB1	P25378	209 aa		4.93	□□□□□ -1.62
UBC6	YER100W	CRM1	P30822	1084 aa	Known RBP	4.93	□□□□□ -1.62
UBC6	YER100W	SNC1	P31109	117 aa		4.93	□□□□□ -1.62
UBC6	YER100W	RIM1	P32445	135 aa	Known RBP	4.93	□□□□□ -1.62
UBC6	YER100W	ATP11	P32453	318 aa		4.93	□□□□□ -1.62
UBC6	YER100W	ROT2	P38138	954 aa		4.93	□□□□□ -1.62
UBC6	YER100W	CCT2	P39076	527 aa	Known RBP	4.93	□□□□□ -1.62
UBC6	YER100W	YIL060W	P40519	144 aa		4.93	□□□□□ -1.62
UBC6	YER100W	HXT9	P40885	567 aa		4.93	□□□□□ -1.62
UBC6	YER100W	YJR011C	P47086	261 aa	Predicted RBP	4.93	□□□□□ -1.62
UBC6	YER100W	ASN2	P49090	572 aa	Known RBP	4.93	□□□□□ -1.62
UBC6	YER100W	SOL4	P53315	255 aa		4.93	□□□□□ -1.62
UBC6	YER100W	SMM1	P53720	384 aa	Known RBP	4.93	□□□□□ -1.62
UBC6	YER100W	RHO4	Q00246	291 aa		4.93	□□□□□ -1.62
UBC6	YER100W	TPO3	Q06451	622 aa		4.93	□□□□□ -1.62
UBC6	YER100W	IRC10	Q08118	586 aa		4.93	□□□□□ -1.62
UBC6	YER100W	BUG1	Q12191	341 aa		4.93	□□□□□ -1.62
UBC6	YER100W	INO80	P53115	1489 aa		4.93	□□□□□ -1.62
UBC6	YER100W	COX3	P00420	269 aa		4.92	□□□□□ -1.62
UBC6	YER100W	ALG1	P16661	449 aa		4.92	□□□□□ -1.62
UBC6	YER100W	RPB8	P20436	146 aa		4.92	□□□□□ -1.62
UBC6	YER100W	PHO91	P27514	894 aa		4.92	□□□□□ -1.62
UBC6	YER100W	HSP104	P31539	908 aa	Known RBP	4.92	□□□□□ -1.62
UBC6	YER100W	PCA1	P38360	1216 aa		4.92	□□□□□ -1.62
UBC6	YER100W	STN1	P38960	494 aa		4.92	□□□□□ -1.62
UBC6	YER100W	UTP6	Q02354	440 aa	Known RBP	4.92	□□□□□ -1.62
UBC6	YER100W	NSE1	Q07913	336 aa		4.92	□□□□□ -1.62
UBC6	YER100W	RLP24	Q07915	199 aa	Known RBP	4.92	□□□□□ -1.62
UBC6	YER100W	SFG1	Q12507	346 aa		4.92	□□□□□ -1.62
UBC6	YER100W	ILV5	P06168	395 aa	Known RBP	4.91	□□□□□ -1.62
UBC6	YER100W	YMR085W	P0CF18	432 aa		4.91	□□□□□ -1.62
UBC6	YER100W	DBP3	P20447	523 aa	Known RBP	4.91	□□□□□ -1.62
UBC6	YER100W	SPO11	P23179	398 aa		4.91	□□□□□ -1.62
UBC6	YER100W	SSE1	P32589	693 aa	Known RBP	4.91	□□□□□ -1.62
UBC6	YER100W	RRN10	P38204	145 aa		4.91	□□□□□ -1.62
UBC6	YER100W	SYG1	P40528	902 aa		4.91	□□□□□ -1.62
UBC6	YER100W	IRC7	P43623	340 aa		4.91	□□□□□ -1.62
UBC6	YER100W	NMD5	P46970	1048 aa		4.91	□□□□□ -1.62
UBC6	YER100W	PKP2	P53170	491 aa		4.91	□□□□□ -1.62
UBC6	YER100W	SLI1	P53304	468 aa		4.91	□□□□□ -1.62
UBC6	YER100W	BUD32	P53323	261 aa		4.91	□□□□□ -1.62
UBC6	YER100W	CTL1	Q03220	320 aa	Known RBP	4.91	□□□□□ -1.62
UBC6	YER100W	HSP31	Q04432	237 aa		4.91	□□□□□ -1.62
UBC6	YER100W	MCP2	Q06567	569 aa		4.91	□□□□□ -1.62
UBC6	YER100W	IPK1	Q06667	281 aa		4.91	□□□□□ -1.62
UBC6	YER100W	YPR089W	O13585	888 aa		4.9	□□□□□ -1.63
UBC6	YER100W	LEU4	P06208	619 aa	Known RBP	4.9	□□□□□ -1.63
UBC6	YER100W	RAD24	P32641	659 aa		4.9	□□□□□ -1.63
UBC6	YER100W	CBP4	P37267	147 aa		4.9	□□□□□ -1.63
UBC6	YER100W	STV1	P37296	890 aa		4.9	□□□□□ -1.63
UBC6	YER100W	LEU5	P38702	357 aa		4.9	□□□□□ -1.63
UBC6	YER100W	GAT2	P40209	560 aa		4.9	□□□□□ -1.63
UBC6	YER100W	YPS6	P40583	537 aa		4.9	□□□□□ -1.63
UBC6	YER100W	SAS2	P40963	338 aa		4.9	□□□□□ -1.63
UBC6	YER100W	KTR5	P53966	522 aa	Predicted RBP	4.9	□□□□□ -1.63
UBC6	YER100W	TAF12	Q03761	539 aa		4.9	□□□□□ -1.63
UBC6	YER100W	VPS20	Q04272	221 aa		4.9	□□□□□ -1.63
UBC6	YER100W	SSK1	Q07084	712 aa		4.9	□□□□□ -1.63
UBC6	YER100W	NDJ1	Q12366	352 aa		4.9	□□□□□ -1.63
UBC6	YER100W	FUN19	P28003	413 aa	Predicted RBP	4.89	□□□□□ -1.63
UBC6	YER100W	UTR4	P32626	227 aa		4.89	□□□□□ -1.63
UBC6	YER100W	HOT13	P36078	116 aa		4.89	□□□□□ -1.63
UBC6	YER100W	POP1	P41812	875 aa		4.89	□□□□□ -1.63
UBC6	YER100W	PRM1	P53835	661 aa		4.89	□□□□□ -1.63
UBC6	YER100W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	4.89	□□□□□ -1.63	not detected
UBC6	YER100W	FMP30	Q02883	468 aa		4.89	□□□□□ -1.63
UBC6	YER100W	MSC3	Q05812	728 aa		4.89	□□□□□ -1.63
UBC6	YER100W	YDL218W	Q07629	317 aa		4.89	□□□□□ -1.63
UBC6	YER100W	RDR1	Q08904	546 aa		4.89	□□□□□ -1.63
UBC6	YER100W	BAR1	P12630	587 aa		4.88	□□□□□ -1.63
UBC6	YER100W	OM45	P16547	393 aa		4.88	□□□□□ -1.63
UBC6	YER100W	YCR007C	P25354	239 aa		4.88	□□□□□ -1.63
UBC6	YER100W	ILV6	P25605	309 aa	Known RBP	4.88	□□□□□ -1.63
UBC6	YER100W	ADY2	P25613	283 aa		4.88	□□□□□ -1.63
UBC6	YER100W	RIB7	P33312	244 aa		4.88	□□□□□ -1.63
UBC6	YER100W	SOR1	P35497	357 aa	Known RBP	4.88	□□□□□ -1.63
UBC6	YER100W	MRPL40	P36534	297 aa		4.88	□□□□□ -1.63
UBC6	YER100W	MSG5	P38590	489 aa		4.88	□□□□□ -1.63
UBC6	YER100W	YHR218W	P38899	603 aa		4.88	□□□□□ -1.63
UBC6	YER100W	FAU1	P40099	211 aa		4.88	□□□□□ -1.63
UBC6	YER100W	MKT1	P40850	830 aa	Known RBP	4.88	□□□□□ -1.63
UBC6	YER100W	PHO86	P46956	311 aa		4.88	□□□□□ -1.63
UBC6	YER100W	YPL014W	Q02606	381 aa		4.88	□□□□□ -1.63
UBC6	YER100W	SOR2	Q07786	357 aa		4.88	□□□□□ -1.63
UBC6	YER100W	GSH2	Q08220	491 aa		4.88	□□□□□ -1.63
UBC6	YER100W	SCH9	P11792	824 aa	Known RBP	4.87	□□□□□ -1.63
UBC6	YER100W	COQ3	P27680	312 aa		4.87	□□□□□ -1.63
UBC6	YER100W	TOM71	P38825	639 aa	Known RBP	4.87	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 15.8 ms