RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	IDP2	P41939	412 aa		3.03	□□□□□ -1.92
RSM28	YDR494W	WSC2	P53832	503 aa		3.03	□□□□□ -1.92
RSM28	YDR494W	RQC1	Q05468	723 aa	Known RBP	3.03	□□□□□ -1.92
RSM28	YDR494W	GRX6	Q12438	231 aa		3.03	□□□□□ -1.92
RSM28	YDR494W	CDC31	P06704	161 aa	Known RBP	3.02	□□□□□ -1.93
RSM28	YDR494W	RHO2	P06781	192 aa		3.02	□□□□□ -1.93
RSM28	YDR494W	RED1	P14291	827 aa		3.02	□□□□□ -1.93
RSM28	YDR494W	PUT3	P25502	979 aa	Predicted RBP	3.02	□□□□□ -1.93
RSM28	YDR494W	SPB1	P25582	841 aa	Predicted RBP	3.02	□□□□□ -1.93
RSM28	YDR494W	IDH2	P28241	369 aa	Known RBP	3.02	□□□□□ -1.93
RSM28	YDR494W	YGR149W	P48236	432 aa		3.02	□□□□□ -1.93
RSM28	YDR494W	TAP42	Q04372	366 aa		3.02	□□□□□ -1.93
RSM28	YDR494W	CTF3	Q12748	733 aa		3.02	□□□□□ -1.93
RSM28	YDR494W	ATP10	P18496	279 aa		3.01	□□□□□ -1.93
RSM28	YDR494W	JNM1	P36224	373 aa		3.01	□□□□□ -1.93
RSM28	YDR494W	THI2	P38141	450 aa		3.01	□□□□□ -1.93
RSM28	YDR494W	RRT2	P38332	387 aa		3.01	□□□□□ -1.93
RSM28	YDR494W	ISC1	P40015	477 aa	Known RBP	3.01	□□□□□ -1.93
RSM28	YDR494W	YMR147W	P40218	223 aa	Known RBP	3.01	□□□□□ -1.93
RSM28	YDR494W	RMD9	P53140	646 aa	Known RBP	3.01	□□□□□ -1.93
RSM28	YDR494W	PIR3	Q03180	325 aa		3.01	□□□□□ -1.93
RSM28	YDR494W	TAF11	Q04226	346 aa		3.01	□□□□□ -1.93
RSM28	YDR494W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	3.01	□□□□□ -1.93	not detected
RSM28	YDR494W	LPD1	P09624	499 aa	Known RBP	3	□□□□□ -1.93
RSM28	YDR494W	SPS4	P09937	338 aa		3	□□□□□ -1.93
RSM28	YDR494W	RPL3	P14126	387 aa	Known RBP	3	□□□□□ -1.93
RSM28	YDR494W	PPH22	P23595	377 aa		3	□□□□□ -1.93
RSM28	YDR494W	NDI1	P32340	513 aa		3	□□□□□ -1.93
RSM28	YDR494W	REC114	P32841	428 aa		3	□□□□□ -1.93
RSM28	YDR494W	MNP1	P53163	194 aa	Predicted RBP	3	□□□□□ -1.93
RSM28	YDR494W	OGG1	P53397	376 aa	Predicted RBP	3	□□□□□ -1.93
RSM28	YDR494W	GIR2	Q03768	265 aa	Predicted RBP	3	□□□□□ -1.93
RSM28	YDR494W	SYF1	Q04048	859 aa	Predicted RBP	3	□□□□□ -1.93
RSM28	YDR494W	SOV1	Q04748	898 aa		3	□□□□□ -1.93
RSM28	YDR494W	YLR287C	Q05881	355 aa		3	□□□□□ -1.93
RSM28	YDR494W	RTN2	Q12443	393 aa		3	□□□□□ -1.93
RSM28	YDR494W	YAR066W	P0CX18	203 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	YHR214W	P0CX19	203 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	PMR1	P13586	950 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	CPR1	P14832	162 aa	Known RBP	2.99	□□□□□ -1.93
RSM28	YDR494W	CRM1	P30822	1084 aa	Known RBP	2.99	□□□□□ -1.93
RSM28	YDR494W	GYP6	P32806	458 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	PRE5	P40302	234 aa	Known RBP	2.99	□□□□□ -1.93
RSM28	YDR494W	VTC2	P43585	828 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	AVT4	P50944	713 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	CAF40	P53829	373 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	NCS2	P53923	493 aa	Predicted RBP	2.99	□□□□□ -1.93
RSM28	YDR494W	VTA1	Q06263	330 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	HNT3	Q08702	217 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	YCL021W-A	Q96VH3	125 aa		2.99	□□□□□ -1.93
RSM28	YDR494W	CLB3	P24870	427 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	YCR100C	P25606	316 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	ERG3	P32353	365 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	HXT3	P32466	567 aa	Known RBP	2.98	□□□□□ -1.93
RSM28	YDR494W	GLC7	P32598	312 aa	Known RBP	2.98	□□□□□ -1.93
RSM28	YDR494W	MRP4	P32902	394 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	GCD10	P41814	478 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	SRB7	P47822	140 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	POP6	P53218	158 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	MSO1	P53604	210 aa	Known RBP	2.98	□□□□□ -1.93
RSM28	YDR494W	ARK1	P53974	638 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	PNG1	Q02890	363 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	RRD2	Q12461	358 aa		2.98	□□□□□ -1.93
RSM28	YDR494W	GPH1	P06738	902 aa	Known RBP	2.97	□□□□□ -1.93
RSM28	YDR494W	RNA14	P25298	677 aa	Known RBP	2.97	□□□□□ -1.93
RSM28	YDR494W	YIM1	P28625	365 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	NIP100	P33420	868 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	SAS3	P34218	831 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	HCS1	P34243	683 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	YCR041W	P37265	110 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	VMA13	P41807	478 aa	Known RBP	2.97	□□□□□ -1.93
RSM28	YDR494W	TFG2	P41896	400 aa	Predicted RBP	2.97	□□□□□ -1.93
RSM28	YDR494W	YFL067W	P43537	175 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	DLD2	P46681	530 aa	Known RBP	2.97	□□□□□ -1.93
RSM28	YDR494W	DSL1	P53847	754 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	SIL1	Q08199	421 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	SFI1	Q12369	946 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	YOL159C-A	Q3E769	90 aa		2.97	□□□□□ -1.93
RSM28	YDR494W	HIP1	P06775	603 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	FUR1	P18562	216 aa	Known RBP	2.96	□□□□□ -1.94
RSM28	YDR494W	YEL045C	P32616	141 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	VHC1	P38329	1120 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	GPD2	P41911	440 aa	Known RBP	2.96	□□□□□ -1.94
RSM28	YDR494W	FMS1	P50264	508 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	ART5	P53244	586 aa	Known RBP	2.96	□□□□□ -1.94
RSM28	YDR494W	PCP1	P53259	346 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	KTR5	P53966	522 aa	Predicted RBP	2.96	□□□□□ -1.94
RSM28	YDR494W	RPA49	Q01080	415 aa	Predicted RBP	2.96	□□□□□ -1.94
RSM28	YDR494W	ODC1	Q03028	310 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	YPL199C	Q08954	240 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	RRG1	Q12167	365 aa	Predicted RBP	2.96	□□□□□ -1.94
RSM28	YDR494W	SCM3	Q12334	223 aa		2.96	□□□□□ -1.94
RSM28	YDR494W	YLR278C	Q05854	1341 aa		2.95	□□□□□ -1.94
RSM28	YDR494W	SAM1	P10659	382 aa	Known RBP	2.95	□□□□□ -1.94
RSM28	YDR494W	CLC1	P17891	233 aa		2.95	□□□□□ -1.94
RSM28	YDR494W	SAM2	P19358	384 aa	Known RBP	2.95	□□□□□ -1.94
RSM28	YDR494W	APE2	P32454	952 aa	Known RBP	2.95	□□□□□ -1.94
RSM28	YDR494W	PRP21	P32524	280 aa	Predicted RBP	2.95	□□□□□ -1.94
RSM28	YDR494W	NPL6	P32832	435 aa		2.95	□□□□□ -1.94
RSM28	YDR494W	NAT2	P37293	288 aa		2.95	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms