RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	IRC10	Q08118	586 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	PUS7	Q08647	676 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	CLP1	Q08685	445 aa	Predicted RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	HXK2	P04807	486 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	ARG3	P05150	338 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	HSF1	P10961	833 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	GUK1	P15454	187 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	UBA1	P22515	1024 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	POL4	P25615	582 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	APE2	P32454	952 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	SSE2	P32590	693 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	YPT52	P36018	234 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	HSE1	P38753	452 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	UBA4	P38820	440 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	FAD1	P38913	306 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	PEX7	P39108	375 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	EMP65	P40085	556 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	AIM23	P47015	356 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	EMC2	P47133	292 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	UPF3	P48412	387 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	MRK1	P50873	501 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	RMR1	P53060	241 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	PRM1	P53835	661 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	YNL018C	P53976	612 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	IDP3	P53982	420 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	5.89	□□□□□ -1.47	not detected
RPT3	YDR394W	IRC15	Q02733	499 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	PIR1	Q03178	341 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	EFR3	Q03653	782 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	YDR239C	Q03780	787 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	RAD33	Q04231	177 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	TRM12	Q04235	462 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	PEX12	Q04370	399 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	EMI2	Q04409	500 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	SSL1	Q04673	461 aa	Predicted RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	SSQ1	Q05931	657 aa	Predicted RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	YLR257W	Q06146	321 aa	Known RBP	5.89	□□□□□ -1.47
RPT3	YDR394W	YOL159C	Q08300	171 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	BUD7	Q08754	746 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	UPC2	Q12151	913 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	JLP1	Q12358	412 aa		5.89	□□□□□ -1.47
RPT3	YDR394W	RAP1	P11938	827 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	APA1	P16550	321 aa	Known RBP	5.88	□□□□□ -1.47
RPT3	YDR394W	ARF2	P19146	181 aa	Known RBP	5.88	□□□□□ -1.47
RPT3	YDR394W	CMK2	P22517	447 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	CNA1	P23287	553 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	PPH22	P23595	377 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	PUP3	P25451	205 aa	Known RBP	5.88	□□□□□ -1.47
RPT3	YDR394W	MRPL9	P31334	269 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	PRP18	P33411	251 aa	Predicted RBP	5.88	□□□□□ -1.47
RPT3	YDR394W	PIC2	P40035	300 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	THO1	P40040	218 aa	Known RBP	5.88	□□□□□ -1.47
RPT3	YDR394W	RIC1	P40395	1056 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	IRC24	P40580	263 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	GAT1	P43574	510 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	TIS11	P47977	285 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	KEL2	P50090	882 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	YNR068C	P53754	272 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	CCE1	Q03702	353 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	TPP1	Q03796	238 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	YDR179W-A	Q03983	463 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	SEG1	Q04279	960 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	CIA1	Q05583	330 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	NSE1	Q07913	336 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	YDR056C	Q12025	205 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	VIK1	Q12045	647 aa		5.88	□□□□□ -1.47
RPT3	YDR394W	COR1	P07256	457 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YAR066W	P0CX18	203 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YHR214W	P0CX19	203 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	REV1	P12689	985 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	SYN8	P31377	255 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	AAR2	P32357	355 aa	Predicted RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	SPS19	P32573	292 aa	Known RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	RMA1	P36001	430 aa	Known RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	SPC42	P36094	363 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	ECM4	P36156	370 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YCR087C-A	P37263	153 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YBR285W	P38354	144 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YHR020W	P38708	688 aa	Known RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	GOS1	P38736	223 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	RBG1	P39729	369 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	HEM14	P40012	539 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	IES5	P40060	125 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	IRR1	P40541	1150 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	FAF1	P40546	346 aa	Predicted RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	GAB1	P41733	394 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	PTR3	P43606	678 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YPT32	P51996	222 aa	Known RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	MNT2	P53059	558 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	ASI1	P54074	624 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	SSY1	Q03770	852 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	PPN1	Q04119	674 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	ENT2	Q05785	613 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	HBT1	Q07653	1046 aa	Known RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	RSA1	Q08932	381 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	SLF1	Q12034	447 aa	Known RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	PFK27	Q12471	397 aa	Predicted RBP	5.87	□□□□□ -1.47
RPT3	YDR394W	YOL159C-A	Q3E769	90 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	YKL018C-A	Q3E7A7	99 aa		5.87	□□□□□ -1.47
RPT3	YDR394W	DFG16	Q99234	619 aa		5.87	□□□□□ -1.47

Retrieved 100 of 5,963 RNA–protein pairs in 19.8 ms