RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 MCM5P33992 734 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 PSMC6P62333 389 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 TROAPQ12815 778 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 LAMC2Q13753 1193 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 BMP2KLQ5H9B9 411 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 FAM47CQ5HY64 1035 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 RASIP1Q5U651 963 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 CCDC62Q6P9F0 684 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 SEPT14Q6ZU15 432 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 STOX1Q6ZVD7 989 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 ZNF365Q70YC5 407 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 SESTD1Q86VW0 696 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 HOMER1Q86YM7 354 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 MB21D2Q8IYB1 491 aaPredicted RBP11.28□□□□□ -0.6
CIITA-207ENST00000571545 RETREG2Q8NC44 543 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 PPTC7Q8NI37 304 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 CAGE1Q8TC20 777 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 TIFAQ96CG3 184 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 FAM161BQ96MY7 647 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 TAAR1Q96RJ0 339 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 CDX2Q99626 313 aaPredicted RBP11.28□□□□□ -0.6
CIITA-207ENST00000571545 SPZ1Q9BXG8 430 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 TRPV6Q9H1D0 765 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 MSRAQ9UJ68 235 aa11.28□□□□□ -0.6
CIITA-207ENST00000571545 CCDC69A6NI79 296 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 FOSL2P15408 326 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 NBPF20Q3BBV1 942 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 GNPTABQ3T906 1256 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 NFXL1Q6ZNB6 911 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 CUL5Q93034 780 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
CIITA-207ENST00000571545 PDCD2LQ9BRP1 358 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 TRMT13Q9NUP7 481 aaKnown RBP11.27□□□□□ -0.61
CIITA-207ENST00000571545 COL20A1Q9P218 1284 aa11.27□□□□□ -0.61
CIITA-207ENST00000571545 PRC1O43663 620 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 ARIH2O95376 493 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 LIFRP42702 1097 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 CCL23P55773 120 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 ARHGAP1Q07960 439 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 PGM5Q15124 567 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 LY6KQ17RY6 165 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 TMEM63BQ5T3F8 832 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 XRRA1Q6P2D8 792 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 TEX2Q8IWB9 1127 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 DHX37Q8IY37 1157 aaKnown RBP11.26□□□□□ -0.61
CIITA-207ENST00000571545 ZNF654Q8IZM8 581 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 MAFAQ8NHW3 353 aaPredicted RBP11.26□□□□□ -0.61
CIITA-207ENST00000571545 IGDCC4Q8TDY8 1250 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 AFG1LQ8WV93 481 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 TBC1D5Q92609 795 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 COPS5Q92905 334 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 PIGSQ96S52 555 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 GAS2L1Q99501 681 aaPredicted RBP11.26□□□□□ -0.61
CIITA-207ENST00000571545 ESYT1Q9BSJ8 1104 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 WNT8AQ9H1J5 351 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 TTYH1Q9H313 450 aaPredicted RBP11.26□□□□□ -0.61
CIITA-207ENST00000571545 ZNF576Q9H609 170 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 ANO2Q9NQ90 1003 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 DDX41Q9UJV9 622 aaKnown RBP11.26□□□□□ -0.61
CIITA-207ENST00000571545 SLC4A7Q9Y6M7 1214 aa11.26□□□□□ -0.61
CIITA-207ENST00000571545 BAZ2BQ9UIF8 2168 aaKnown RBP11.26□□□□□ -0.61
CIITA-207ENST00000571545 MYH7BA7E2Y1 1941 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 OPLAHO14841 1288 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 PPP1R11O60927 126 aaPredicted RBP11.25□□□□□ -0.61
CIITA-207ENST00000571545 BAIAP3O94812 1187 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 F2P00734 622 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 ACRP10323 421 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 MYCLP12524 364 aaPredicted RBP11.25□□□□□ -0.61
CIITA-207ENST00000571545 PTGS1P23219 599 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 PTGISQ16647 500 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 SYNE3Q6ZMZ3 975 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 C16orf59Q7L2K0 433 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 CHST3Q7LGC8 479 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 VSIG10LQ86VR7 867 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.25□□□□□ -0.61
CIITA-207ENST00000571545 C7orf31Q8N865 590 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 AFAP1L1Q8TED9 768 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 SLC9A7Q96T83 725 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 PBX4Q9BYU1 374 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 LSG1Q9H089 658 aaKnown RBP11.25□□□□□ -0.61
CIITA-207ENST00000571545 SLC28A3Q9HAS3 691 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 LY9Q9HBG7 655 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 FRMPD4Q14CM0 1322 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 UMODL1Q5DID0 1318 aa11.25□□□□□ -0.61
CIITA-207ENST00000571545 ZBBXA8MT70 800 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 PIK3CDO00329 1044 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 SH2B2O14492 632 aaPredicted RBP11.24□□□□□ -0.61
CIITA-207ENST00000571545 SLC27A2O14975 620 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 CYTH3O43739 400 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 PPFIA4O75335 1185 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 CYP2C9P11712 490 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 HOXD8P13378 290 aaPredicted RBP11.24□□□□□ -0.61
CIITA-207ENST00000571545 HOXA13P31271 388 aaPredicted RBP11.24□□□□□ -0.61
CIITA-207ENST00000571545 ANTXR2P58335 489 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 RBL2Q08999 1139 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 NEDD9Q14511 834 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 KRT32Q14532 448 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 CELF3Q5SZQ8 465 aaKnown RBP11.24□□□□□ -0.61
CIITA-207ENST00000571545 OTOP2Q7RTS6 562 aa11.24□□□□□ -0.61
CIITA-207ENST00000571545 FCHSD1Q86WN1 690 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms