RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CCND2P30279 289 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 GHRHRQ02643 423 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 PTPN11Q06124 597 aaPredicted RBP15.81■□□□□ 0.12
TCOF1-215ENST00000515516 LAMC2Q13753 1193 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 DGKDQ16760 1214 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 SYNE3Q6ZMZ3 975 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 FCHSD1Q86WN1 690 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 DHX37Q8IY37 1157 aaKnown RBP15.81■□□□□ 0.12
TCOF1-215ENST00000515516 RETREG2Q8NC44 543 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 PDCD2LQ9BRP1 358 aa15.81■□□□□ 0.12
TCOF1-215ENST00000515516 TRMT13Q9NUP7 481 aaKnown RBP15.81■□□□□ 0.12
TCOF1-215ENST00000515516 DDX41Q9UJV9 622 aaKnown RBP15.81■□□□□ 0.12
TCOF1-215ENST00000515516 LAMA3Q16787 3333 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 TMEM265A0A087WTH1 108 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 MMP3P08254 477 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 SMARCA1P28370 1054 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 ARHGAP1Q07960 439 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 NECTIN1Q15223 517 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 C16orf59Q7L2K0 433 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 CUL5Q93034 780 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 GUCD1Q96NT3 240 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 MYL10Q9BUA6 226 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 SPZ1Q9BXG8 430 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 SLC12A7Q9Y666 1083 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 LRRC37A2A6NM11 1700 aa15.8■□□□□ 0.12
TCOF1-215ENST00000515516 UMODL1Q5DID0 1318 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 SH2B2O14492 632 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-215ENST00000515516 CYP2C9P11712 490 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 LIFRP42702 1097 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 PGM5Q15124 567 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 SLC35G1Q2M3R5 365 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 VSIG10LQ86VR7 867 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 HERVK_113Q902F9 699 aa15.79■□□□□ 0.12
TCOF1-215ENST00000515516 EMID1Q96A84 441 aaPredicted RBP15.79■□□□□ 0.12
TCOF1-215ENST00000515516 CDC45O75419 566 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 TGFB3P10600 412 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 BFSP2Q13515 415 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 GNPTABQ3T906 1256 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 OTOP2Q7RTS6 562 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 CCDC155Q8N6L0 562 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 PPTC7Q8NI37 304 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 SMARCC2Q8TAQ2 1214 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 TIFAQ96CG3 184 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 CCDC136Q96JN2 1154 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 CDX2Q99626 313 aaPredicted RBP15.78■□□□□ 0.12
TCOF1-215ENST00000515516 KATNAL1Q9BW62 490 aa15.78■□□□□ 0.12
TCOF1-215ENST00000515516 PFKMP08237 780 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 DNAJB2P25686 324 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 PTGISQ16647 500 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 SKAP1Q86WV1 359 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 C7orf31Q8N865 590 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 PPP1R13LQ8WUF5 828 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 SCLYQ96I15 445 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 SPATA33Q96N06 139 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 NEK1Q96PY6 1258 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 WNT8AQ9H1J5 351 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 MLXIPQ9HAP2 919 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 MSRAQ9UJ68 235 aa15.77■□□□□ 0.12
TCOF1-215ENST00000515516 LCTP09848 1927 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 ZBBXA8MT70 800 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 PPFIA4O75335 1185 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 STAM2O75886 525 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 GGPS1O95749 300 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 ACTN1P12814 892 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 RFC2P35250 354 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 KRT32Q14532 448 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 RAB30Q15771 203 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 CELF3Q5SZQ8 465 aaKnown RBP15.76■□□□□ 0.11
TCOF1-215ENST00000515516 RASIP1Q5U651 963 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 DEFB128Q7Z7B8 93 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 SRBD1Q8N5C6 995 aaKnown RBP15.76■□□□□ 0.11
TCOF1-215ENST00000515516 LRRC2Q9BYS8 371 aa15.76■□□□□ 0.11
TCOF1-215ENST00000515516 TTYH1Q9H313 450 aaPredicted RBP15.76■□□□□ 0.11
TCOF1-215ENST00000515516 PITPNM1O00562 1244 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 SORBS3O60504 671 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 PLEKHA8P1O95397 391 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 FOSL2P15408 326 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 RXRAP19793 462 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 PSEN2P49810 448 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 MFSD10Q14728 455 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 MYSM1Q5VVJ2 828 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 SESTD1Q86VW0 696 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 FANCBQ8NB91 859 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 IL31RAQ8NI17 732 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 ALG1Q9BT22 464 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 FTOQ9C0B1 505 aaKnown RBP eCLIP15.75■□□□□ 0.112e-6■□□□□ 9.3
TCOF1-215ENST00000515516 ZNF576Q9H609 170 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 SLC4A7Q9Y6M7 1214 aa15.75■□□□□ 0.11
TCOF1-215ENST00000515516 GRXCR1A8MXD5 290 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 RGS20O76081 388 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 IQCF3P0C7M6 154 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 FGD1P98174 961 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 KIAA0753Q2KHM9 967 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 XRRA1Q6P2D8 792 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 DHX32Q7L7V1 743 aaKnown RBP15.74■□□□□ 0.11
TCOF1-215ENST00000515516 SGMS1Q86VZ5 419 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 MICU3Q86XE3 530 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 RAB11FIP4Q86YS3 637 aa15.74■□□□□ 0.11
TCOF1-215ENST00000515516 CMTR1Q8N1G2 835 aaKnown RBP15.74■□□□□ 0.11
TCOF1-215ENST00000515516 CCDC82Q8N4S0 544 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms