RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 POU3F3P20264 500 aaPredicted RBP24.49■■□□□ 1.51
SQSTM1-210ENST00000506042 B4GALNT3Q6L9W6 998 aa24.49■■□□□ 1.51
SQSTM1-210ENST00000506042 SYTL5Q8TDW5 730 aaPredicted RBP24.49■■□□□ 1.51
SQSTM1-210ENST00000506042 COPS5Q92905 334 aa24.49■■□□□ 1.51
SQSTM1-210ENST00000506042 ERICH2A1L162 156 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 B4E1Z4 1266 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 CFBP00751 764 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 CCDC62Q6P9F0 684 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 CNKSR3Q6P9H4 555 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 LRRC8DQ7L1W4 858 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 SMC5Q8IY18 1101 aa24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 DHX37Q8IY37 1157 aaKnown RBP24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 EMID1Q96A84 441 aaPredicted RBP24.48■■□□□ 1.51
SQSTM1-210ENST00000506042 MYOGP15173 224 aa24.47■■□□□ 1.51
SQSTM1-210ENST00000506042 LY6KQ17RY6 165 aa24.47■■□□□ 1.51
SQSTM1-210ENST00000506042 QRICH1Q2TAL8 776 aa24.47■■□□□ 1.51
SQSTM1-210ENST00000506042 TAAR1Q96RJ0 339 aa24.47■■□□□ 1.51
SQSTM1-210ENST00000506042 VAT1LQ9HCJ6 419 aa24.47■■□□□ 1.51
SQSTM1-210ENST00000506042 KIAA1217Q5T5P2 1943 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 ABHD14A-ACY1A0A1B0GW23 586 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 ARHGAP1Q07960 439 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 ENAHQ8N8S7 591 aaPredicted RBP24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 PPTC7Q8NI37 304 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 ARNTL2Q8WYA1 636 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 C1QTNF1Q9BXJ1 281 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 GTF2IRD1Q9UHL9 959 aa24.46■■□□□ 1.51
SQSTM1-210ENST00000506042 EYSQ5T1H1 3165 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 EMSYQ7Z589 1322 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 NR3C2P08235 984 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 EIF2AK2P19525 551 aaKnown RBP24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 IKBKEQ14164 716 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 SART3Q15020 963 aaKnown RBP24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 PXMP2Q9NR77 195 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 ZSWIM5Q9P217 1185 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 SCN5AQ14524 2016 aa24.45■■□□□ 1.5
SQSTM1-210ENST00000506042 ARIH2O95376 493 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 TGFB3P10600 412 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 PSEN2P49810 448 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 NUCB1Q02818 461 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 RBL2Q08999 1139 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 PTK7Q13308 1070 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 RUFY2Q8WXA3 655 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 LMCD1Q9NZU5 365 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 DDX41Q9UJV9 622 aaKnown RBP24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 MTCH2Q9Y6C9 303 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 CDH23Q9H251 3354 aa24.44■■□□□ 1.5
SQSTM1-210ENST00000506042 PPFIA4O75335 1185 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 COL9A1P20849 921 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 TAP1Q03518 808 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 MFSD10Q14728 455 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 GDF6Q6KF10 455 aaPredicted RBP24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 PLEKHM2Q8IWE5 1019 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 ALG1Q9BT22 464 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 CPVLQ9H3G5 476 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 JMJD4Q9H9V9 463 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 PCDHA1Q9Y5I3 950 aa24.43■■□□□ 1.5
SQSTM1-210ENST00000506042 KLRF2D3W0D1 207 aa24.42■■□□□ 1.5
SQSTM1-210ENST00000506042 ZBTB5O15062 677 aa24.42■■□□□ 1.5
SQSTM1-210ENST00000506042 KIAA0753Q2KHM9 967 aa24.42■■□□□ 1.5
SQSTM1-210ENST00000506042 GNPTABQ3T906 1256 aa24.42■■□□□ 1.5
SQSTM1-210ENST00000506042 HLA-CQ95604 372 aa24.42■■□□□ 1.5
SQSTM1-210ENST00000506042 CERS4Q9HA82 394 aa24.42■■□□□ 1.5
SQSTM1-210ENST00000506042 F2P00734 622 aa24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 CKBP12277 381 aa24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 MYCLP12524 364 aaPredicted RBP24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 CCND2P30279 289 aa24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 HSD17B4P51659 736 aa24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 WDR5P61964 334 aaKnown RBP24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 RALYLQ86SE5 291 aaKnown RBP24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 RAD9AQ99638 391 aa24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 U3KPZ7 1027 aaPredicted RBP24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 PRUNE2Q8WUY3 3088 aa24.41■■□□□ 1.5
SQSTM1-210ENST00000506042 GCOM1H8Y6P7 765 aaPredicted RBP24.4■■□□□ 1.5
SQSTM1-210ENST00000506042 POLR2MP0CAP2 368 aa24.4■■□□□ 1.5
SQSTM1-210ENST00000506042 SPATA33Q96N06 139 aa24.4■■□□□ 1.5
SQSTM1-210ENST00000506042 MLXIPQ9HAP2 919 aa24.4■■□□□ 1.5
SQSTM1-210ENST00000506042 HDAC6Q9UBN7 1215 aa24.4■■□□□ 1.5
SQSTM1-210ENST00000506042 NOP56O00567 594 aaKnown RBP24.39■■□□□ 1.49
SQSTM1-210ENST00000506042 STAM2O75886 525 aa24.39■■□□□ 1.49
SQSTM1-210ENST00000506042 CXCL10P02778 98 aa24.39■■□□□ 1.49
SQSTM1-210ENST00000506042 GNAT1P11488 350 aa24.39■■□□□ 1.49
SQSTM1-210ENST00000506042 VWCEQ96DN2 955 aa24.39■■□□□ 1.49
SQSTM1-210ENST00000506042 COL20A1Q9P218 1284 aa24.39■■□□□ 1.49
SQSTM1-210ENST00000506042 AMHP03971 560 aa24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 GHRHRQ02643 423 aa24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 STOX1Q6ZVD7 989 aa24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 TBC1D5Q92609 795 aa24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 KAT2BQ92831 832 aa24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 TGS1Q96RS0 853 aaKnown RBP24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 PDCD2LQ9BRP1 358 aa24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 TRIP12Q14669 1992 aaPredicted RBP24.38■■□□□ 1.49
SQSTM1-210ENST00000506042 GJB5O95377 273 aa24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 ZNF286BP0CG31 522 aa24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 BMP1P13497 986 aa24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 CELF3Q5SZQ8 465 aaKnown RBP24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 HOMER1Q86YM7 354 aa24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 PPP1R13LQ8WUF5 828 aa24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 INSL6Q9Y581 213 aa24.37■■□□□ 1.49
SQSTM1-210ENST00000506042 CAND2O75155 1236 aa24.36■■□□□ 1.49
SQSTM1-210ENST00000506042 GGPS1O95749 300 aa24.36■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms