RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 BAIAP3O94812 1187 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 CYP2C9P11712 490 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 MRPS5P82675 430 aaKnown RBP13.48□□□□□ -0.25
COL6A3-213ENST00000493475 SEPT14Q6ZU15 432 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 DEFB128Q7Z7B8 93 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 ADGRF4Q8IZF3 695 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 C7orf31Q8N865 590 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 AFAP1L1Q8TED9 768 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 SCLYQ96I15 445 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 AMNQ9BXJ7 453 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 UBA5Q9GZZ9 404 aa13.48□□□□□ -0.25
COL6A3-213ENST00000493475 CXXC1Q9P0U4 656 aaPredicted RBP13.48□□□□□ -0.25
COL6A3-213ENST00000493475 DDX49Q9Y6V7 483 aaKnown RBP13.48□□□□□ -0.25
COL6A3-213ENST00000493475 B4E1Z4 1266 aa13.47□□□□□ -0.25
COL6A3-213ENST00000493475 EIF3JO75822 258 aaKnown RBP13.47□□□□□ -0.25
COL6A3-213ENST00000493475 LAMC2Q13753 1193 aa13.47□□□□□ -0.25
COL6A3-213ENST00000493475 PTGISQ16647 500 aa13.47□□□□□ -0.25
COL6A3-213ENST00000493475 PLEKHM2Q8IWE5 1019 aa13.47□□□□□ -0.25
COL6A3-213ENST00000493475 SYTL5Q8TDW5 730 aaPredicted RBP13.47□□□□□ -0.25
COL6A3-213ENST00000493475 KIF12Q96FN5 646 aa13.47□□□□□ -0.25
COL6A3-213ENST00000493475 MRVI1Q9Y6F6 885 aa13.47□□□□□ -0.25
COL6A3-213ENST00000493475 TNFRSF10AO00220 468 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 EFCAB14O75071 495 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 CFBP00751 764 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 MMP3P08254 477 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 SKIV2LQ15477 1246 aaKnown RBP13.46□□□□□ -0.25
COL6A3-213ENST00000493475 MAMSTRQ6ZN01 415 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 CHST3Q7LGC8 479 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 RALYLQ86SE5 291 aaKnown RBP13.46□□□□□ -0.25
COL6A3-213ENST00000493475 DHX37Q8IY37 1157 aaKnown RBP13.46□□□□□ -0.25
COL6A3-213ENST00000493475 ENAHQ8N8S7 591 aaPredicted RBP13.46□□□□□ -0.25
COL6A3-213ENST00000493475 VAT1LQ9HCJ6 419 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 ZSWIM5Q9P217 1185 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 TRPC6Q9Y210 931 aa13.46□□□□□ -0.25
COL6A3-213ENST00000493475 TTC28Q96AY4 2481 aa13.46□□□□□ -0.26
COL6A3-213ENST00000493475 IQCF3P0C7M6 154 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 CCDC85BQ15834 202 aaPredicted RBP13.45□□□□□ -0.26
COL6A3-213ENST00000493475 QRICH1Q2TAL8 776 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 SESTD1Q86VW0 696 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 MICALL1Q8N3F8 863 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 AFG1LQ8WV93 481 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 ASB2Q96Q27 587 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 ZBED2Q9BTP6 218 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 PRDM6Q9NQX0 595 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 VCANP13611 3396 aa13.45□□□□□ -0.26
COL6A3-213ENST00000493475 EYSQ5T1H1 3165 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 KLRF2D3W0D1 207 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 ZBTB5O15062 677 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 NR3C2P08235 984 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 SELPP16109 830 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 EIF2AK2P19525 551 aaKnown RBP13.44□□□□□ -0.26
COL6A3-213ENST00000493475 PTGS1P23219 599 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 RABGGTBP53611 331 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 LY6KQ17RY6 165 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 GNPTABQ3T906 1256 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 TMEM63BQ5T3F8 832 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 CCDC62Q6P9F0 684 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 PPTC7Q8NI37 304 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 COPS5Q92905 334 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 EMID1Q96A84 441 aaPredicted RBP13.44□□□□□ -0.26
COL6A3-213ENST00000493475 YTHDC1Q96MU7 727 aaKnown RBP13.44□□□□□ -0.26
COL6A3-213ENST00000493475 TAAR1Q96RJ0 339 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 PXMP2Q9NR77 195 aa13.44□□□□□ -0.26
COL6A3-213ENST00000493475 YBX2Q9Y2T7 364 aaKnown RBP13.44□□□□□ -0.26
COL6A3-213ENST00000493475 EMSYQ7Z589 1322 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 TLL1O43897 1013 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 CA3P07451 260 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 TGFB3P10600 412 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 ARHGAP1Q07960 439 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 LRRC8DQ7L1W4 858 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 HERC6Q8IVU3 1022 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 USP38Q8NB14 1042 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 JMJD4Q9H9V9 463 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 BMP2KQ9NSY1 1161 aaPredicted RBP13.43□□□□□ -0.26
COL6A3-213ENST00000493475 PCDHA1Q9Y5I3 950 aa13.43□□□□□ -0.26
COL6A3-213ENST00000493475 GCOM1H8Y6P7 765 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-213ENST00000493475 PPFIA4O75335 1185 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 STAM2O75886 525 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 ARIH2O95376 493 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 POLR2MP0CAP2 368 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 CCND2P30279 289 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 HSD17B4P51659 736 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 PTK7Q13308 1070 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 MFSD10Q14728 455 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 CNKSR3Q6P9H4 555 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 CATIPQ7Z7H3 387 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 UHRF1Q96T88 793 aaPredicted RBP13.42□□□□□ -0.26
COL6A3-213ENST00000493475 CPVLQ9H3G5 476 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 MLXIPQ9HAP2 919 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 GTF2IRD1Q9UHL9 959 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 DDX41Q9UJV9 622 aaKnown RBP13.42□□□□□ -0.26
COL6A3-213ENST00000493475 COG5Q9UP83 839 aa13.42□□□□□ -0.26
COL6A3-213ENST00000493475 PRUNE2Q8WUY3 3088 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 ABHD14A-ACY1A0A1B0GW23 586 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 NOP56O00567 594 aaKnown RBP13.41□□□□□ -0.26
COL6A3-213ENST00000493475 IFIT3O14879 490 aaKnown RBP13.41□□□□□ -0.26
COL6A3-213ENST00000493475 GNAT1P11488 350 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 MYCLP12524 364 aaPredicted RBP13.41□□□□□ -0.26
COL6A3-213ENST00000493475 PSEN2P49810 448 aa13.41□□□□□ -0.26
COL6A3-213ENST00000493475 IKBKEQ14164 716 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms