RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 SCFD2Q8WU76 684 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 INTS4Q96HW7 963 aaKnown RBP9.45□□□□□ -0.9
SF3A1-208ENST00000485618 C8orf76Q96K31 380 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 TAAR1Q96RJ0 339 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 AP5M1Q9H0R1 490 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 PXMP2Q9NR77 195 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 ZHX1Q9UKY1 873 aaPredicted RBP9.45□□□□□ -0.9
SF3A1-208ENST00000485618 PCDHA6Q9UN73 950 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 PCDHA4Q9UN74 947 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 PCDHA8Q9Y5H6 950 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 PLXNB2O15031 1838 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 ZNF236Q9UL36 1845 aa9.45□□□□□ -0.9
SF3A1-208ENST00000485618 CCDC194A0A1B0GVG4 234 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 H3BQV1 296 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 K7ELQ4 463 aaPredicted RBP9.44□□□□□ -0.9
SF3A1-208ENST00000485618 MEIS2O14770 477 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 MAFGO15525 162 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 MYCLP12524 364 aaPredicted RBP9.44□□□□□ -0.9
SF3A1-208ENST00000485618 SYN1P17600 705 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 EIF2AK2P19525 551 aaKnown RBP9.44□□□□□ -0.9
SF3A1-208ENST00000485618 TNFAIP2Q03169 654 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 TTLL4Q14679 1199 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 MAP3K21Q5TCX8 1036 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 PCNX4Q63HM2 1172 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 USP17L6PQ6QN14 398 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 KRT25Q7Z3Z0 450 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 TBC1D5Q92609 795 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 PDCD2LQ9BRP1 358 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 C11orf49Q9H6J7 331 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 FLRT1Q9NZU1 646 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 VPS54Q9P1Q0 977 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 DDX20Q9UHI6 824 aaKnown RBP9.44□□□□□ -0.9
SF3A1-208ENST00000485618 Q9Y3F1 56 aa9.44□□□□□ -0.9
SF3A1-208ENST00000485618 RANBP2P49792 3224 aaKnown RBP9.44□□□□□ -0.9
SF3A1-208ENST00000485618 OPLAHO14841 1288 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 DUSP11O75319 330 aaKnown RBP9.43□□□□□ -0.9
SF3A1-208ENST00000485618 CTDNEP1O95476 244 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 SNAI1O95863 264 aaPredicted RBP9.43□□□□□ -0.9
SF3A1-208ENST00000485618 EDNRBP24530 442 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 KRT2P35908 639 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 USP11P51784 963 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 CCDC144BQ3MJ40 725 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 RNF180Q86T96 592 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 DAGLBQ8NCG7 672 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 GDF15Q99988 308 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 WDR11Q9BZH6 1224 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 TCEAL9Q9UHQ7 104 aa9.43□□□□□ -0.9
SF3A1-208ENST00000485618 JAK2O60674 1132 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 KPNA6O60684 536 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 PPFIA3O75145 1194 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 LARGE1O95461 756 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 IGHA2P01877 340 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 CYBAP13498 195 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 TAL1P17542 331 aaPredicted RBP9.42□□□□□ -0.9
SF3A1-208ENST00000485618 BMP8BP34820 402 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 MAGEA10P43363 369 aaPredicted RBP9.42□□□□□ -0.9
SF3A1-208ENST00000485618 CUL4AQ13619 759 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 NEDD9Q14511 834 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 PGM5Q15124 567 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 NONOQ15233 471 aaKnown RBP eCLIP9.42□□□□□ -0.9
SF3A1-208ENST00000485618 UBE2SQ16763 222 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 JAKMIP3Q5VZ66 844 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 LARP1BQ659C4 914 aaKnown RBP9.42□□□□□ -0.9
SF3A1-208ENST00000485618 NIPA1Q7RTP0 329 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 PCSK9Q8NBP7 692 aaKnown RBP9.42□□□□□ -0.9
SF3A1-208ENST00000485618 PHF20Q9BVI0 1012 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 ANO3Q9BYT9 981 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 MRVI1Q9Y6F6 885 aa9.42□□□□□ -0.9
SF3A1-208ENST00000485618 SMCHD1A6NHR9 2005 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 FRMPD4Q14CM0 1322 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 RBM47A0AV96 593 aaKnown RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 KBTBD13C9JR72 458 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 FIBPO43427 364 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 MARCH6O60337 910 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 MMP1P03956 469 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 ZNF865P0CJ78 1059 aaPredicted RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 TXNP10599 105 aaKnown RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 FDPSP14324 419 aaKnown RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 GCFC2P16383 781 aaKnown RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 GJB2P29033 226 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 CCND3P30281 292 aaPredicted RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 SREBF1P36956 1147 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 CPT1AP50416 773 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 ARHGAP4P98171 946 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 SETQ01105 290 aaPredicted RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 MTMR1Q13613 665 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 LAMC2Q13753 1193 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 DUSP28Q4G0W2 176 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 CEP55Q53EZ4 464 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 PRAMEF19Q5SWL8 479 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 SEPT14Q6ZU15 432 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 EEPD1Q7L9B9 569 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 TDHQ8IZJ6 230 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 DEFB123Q8N688 67 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 FBXO18Q8NFZ0 1043 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 GPRASP2Q96D09 838 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 FGD4Q96M96 766 aa9.41□□□□□ -0.9
SF3A1-208ENST00000485618 PURBQ96QR8 312 aaKnown RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 UBE2OQ9C0C9 1292 aaKnown RBP9.41□□□□□ -0.9
SF3A1-208ENST00000485618 FOXP1Q9H334 677 aaPredicted RBP9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms