RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 CST5P28325 142 aaPredicted RBP23.31■■□□□ 1.32
SKA3-205ENST00000465471 CCND2P30279 289 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 MRPS9P82933 396 aaKnown RBP23.31■■□□□ 1.32
SKA3-205ENST00000465471 AP3B2Q13367 1082 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 PCNX4Q63HM2 1172 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 XRRA1Q6P2D8 792 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 CCDC62Q6P9F0 684 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 KLHDC9Q8NEP7 349 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 AIFM3Q96NN9 605 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 WDR11Q9BZH6 1224 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 C6orf50Q9HD87 102 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 PCDHA6Q9UN73 950 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 Q9Y3F1 56 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 PCDHA8Q9Y5H6 950 aa23.31■■□□□ 1.32
SKA3-205ENST00000465471 TNRC18O15417 2968 aaPredicted RBP23.31■■□□□ 1.32
SKA3-205ENST00000465471 SPDYE3A6NKU9 549 aa23.3■■□□□ 1.32
SKA3-205ENST00000465471 STAM2O75886 525 aa23.3■■□□□ 1.32
SKA3-205ENST00000465471 ARIH2O95376 493 aa23.3■■□□□ 1.32
SKA3-205ENST00000465471 FOSP01100 380 aaPredicted RBP23.3■■□□□ 1.32
SKA3-205ENST00000465471 MYCLP12524 364 aaPredicted RBP23.3■■□□□ 1.32
SKA3-205ENST00000465471 CCSAPQ6IQ19 270 aaPredicted RBP23.3■■□□□ 1.32
SKA3-205ENST00000465471 PAWRQ96IZ0 340 aaKnown RBP23.3■■□□□ 1.32
SKA3-205ENST00000465471 PTGS1P23219 599 aa23.29■■□□□ 1.32
SKA3-205ENST00000465471 GNA11P29992 359 aa23.29■■□□□ 1.32
SKA3-205ENST00000465471 TTLL4Q14679 1199 aa23.29■■□□□ 1.32
SKA3-205ENST00000465471 NPY5RQ15761 445 aa23.29■■□□□ 1.32
SKA3-205ENST00000465471 GJC2Q5T442 439 aaPredicted RBP23.29■■□□□ 1.32
SKA3-205ENST00000465471 TLK2Q86UE8 772 aa23.29■■□□□ 1.32
SKA3-205ENST00000465471 INPP4AQ96PE3 977 aaPredicted RBP23.29■■□□□ 1.32
SKA3-205ENST00000465471 TMEM260Q9NX78 707 aa23.29■■□□□ 1.32
SKA3-205ENST00000465471 ORC3Q9UBD5 711 aaPredicted RBP23.29■■□□□ 1.32
SKA3-205ENST00000465471 ALPK3Q96L96 1907 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 MYADML2A6NDP7 307 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 NKRFO15226 690 aaKnown RBP eCLIP23.28■■□□□ 1.32
SKA3-205ENST00000465471 JAK2O60674 1132 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 DTNBO60941 627 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 SEPT14Q6ZU15 432 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 NECAB2Q7Z6G3 386 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 RNF180Q86T96 592 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 CCDC83Q8IWF9 413 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 REXO1Q8N1G1 1221 aaKnown RBP23.28■■□□□ 1.32
SKA3-205ENST00000465471 DAGLBQ8NCG7 672 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 LLPHQ9BRT6 129 aaKnown RBP23.28■■□□□ 1.32
SKA3-205ENST00000465471 ANO3Q9BYT9 981 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 C11orf49Q9H6J7 331 aa23.28■■□□□ 1.32
SKA3-205ENST00000465471 TXNP10599 105 aaKnown RBP23.27■■□□□ 1.32
SKA3-205ENST00000465471 SREBF1P36956 1147 aa23.27■■□□□ 1.32
SKA3-205ENST00000465471 IRX5P78411 483 aaPredicted RBP23.27■■□□□ 1.32
SKA3-205ENST00000465471 MCTP2Q6DN12 878 aa23.27■■□□□ 1.32
SKA3-205ENST00000465471 BICD2Q8TD16 824 aa23.27■■□□□ 1.32
SKA3-205ENST00000465471 CRYGNQ8WXF5 182 aa23.27■■□□□ 1.32
SKA3-205ENST00000465471 TSEN34Q9BSV6 310 aaKnown RBP23.27■■□□□ 1.32
SKA3-205ENST00000465471 EHMT1Q9H9B1 1298 aa23.27■■□□□ 1.32
SKA3-205ENST00000465471 DDX41Q9UJV9 622 aaKnown RBP23.27■■□□□ 1.32
SKA3-205ENST00000465471 PHF24Q9UPV7 400 aa23.27■■□□□ 1.32
SKA3-205ENST00000465471 KBTBD13C9JR72 458 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 M0R2N6 131 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 ICAM3P32942 547 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 MCM2P49736 904 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 MLLT1Q03111 559 aaPredicted RBP23.26■■□□□ 1.31
SKA3-205ENST00000465471 WASF1Q92558 559 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 PGBD1Q96JS3 809 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 PHF20Q9BVI0 1012 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 SPC25Q9HBM1 224 aa23.26■■□□□ 1.31
SKA3-205ENST00000465471 MYH7BA7E2Y1 1941 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 C6orf222P0C671 652 aaPredicted RBP23.25■■□□□ 1.31
SKA3-205ENST00000465471 NLRP5P59047 1200 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 SEMA3FQ13275 785 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 JAKMIP3Q5VZ66 844 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 GALNT17Q6IS24 598 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 KCNV1Q6PIU1 500 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 COPS5Q92905 334 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 ZFP91Q96JP5 570 aaPredicted RBP23.25■■□□□ 1.31
SKA3-205ENST00000465471 ALG1Q9BT22 464 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 PCDHA4Q9UN74 947 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 UBIAD1Q9Y5Z9 338 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 MRVI1Q9Y6F6 885 aa23.25■■□□□ 1.31
SKA3-205ENST00000465471 MOXD2PA6NHM9 499 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 DYNC1LI2O43237 492 aaPredicted RBP23.24■■□□□ 1.31
SKA3-205ENST00000465471 TGFB3P10600 412 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 FSCN1Q16658 493 aaKnown RBP23.24■■□□□ 1.31
SKA3-205ENST00000465471 LY6KQ17RY6 165 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 GNPTABQ3T906 1256 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 RASGRP4Q8TDF6 673 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 EMID1Q96A84 441 aaPredicted RBP23.24■■□□□ 1.31
SKA3-205ENST00000465471 TMX3Q96JJ7 454 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 AP5M1Q9H0R1 490 aa23.24■■□□□ 1.31
SKA3-205ENST00000465471 SPATA31C2B4DYI2 1134 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 ITGB5P18084 799 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 ARHGAP1Q07960 439 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 KCNA10Q16322 511 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 PCSK9Q8NBP7 692 aaKnown RBP23.23■■□□□ 1.31
SKA3-205ENST00000465471 GPRASP2Q96D09 838 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 GJB4Q9NTQ9 266 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 RTEL1Q9NZ71 1219 aa23.23■■□□□ 1.31
SKA3-205ENST00000465471 FIBPO43427 364 aa23.22■■□□□ 1.31
SKA3-205ENST00000465471 GH1P01241 217 aa23.22■■□□□ 1.31
SKA3-205ENST00000465471 CYP3A4P08684 503 aa23.22■■□□□ 1.31
SKA3-205ENST00000465471 XBP1P17861 261 aa23.22■■□□□ 1.31
SKA3-205ENST00000465471 UBA1P22314 1058 aaKnown RBP23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms