RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 OR8K1Q8NGG5 319 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 LRRC4Q9HBW1 653 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 ARHGAP6O43182 974 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 PHBP35232 272 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 HLFQ16534 295 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 PTPN21Q16825 1174 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 PRDM5Q9NQX1 630 aaPredicted RBP16.98■□□□□ 0.31
PTPRF-201ENST00000359947 EFCAB6Q5THR3 1501 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 CIAO1O76071 339 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 ELF2Q15723 593 aa16.98■□□□□ 0.31
PTPRF-201ENST00000359947 RNF207Q6ZRF8 634 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 SPATA17Q96L03 361 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 LONP1P36776 959 aaKnown RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 CTTNQ14247 550 aaKnown RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 SPDYE1Q8NFV5 336 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 HEXIM2Q96MH2 286 aaKnown RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 ACCSQ96QU6 501 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 IMPACTQ9P2X3 320 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 GOLGA8IPA6NC78 632 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 GOLGA8JA6NMD2 632 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 PSAPP07602 524 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 SH3RF3Q8TEJ3 882 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 TSKSQ9UJT2 592 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 ANGPTL3Q9Y5C1 460 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 ADD2P35612 726 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 KRT33BQ14525 404 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 EFCC1Q9HA90 598 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 GTPBP6O43824 516 aaPredicted RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 ECE2O60344 883 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 CDK8P49336 464 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 SNX1Q13596 522 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 CNOT6LQ96LI5 555 aaKnown RBP16.97■□□□□ 0.31
PTPRF-201ENST00000359947 BBS5Q8N3I7 341 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 FANCLQ9NW38 375 aa16.97■□□□□ 0.31
PTPRF-201ENST00000359947 S100BP04271 92 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 RNF139Q8WU17 664 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 ZNF668Q96K58 619 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 PCDHA7Q9UN72 937 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 CRKP46108 304 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 RASSF7Q02833 373 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 ANKRD20A3Q5VUR7 823 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 RUFY4Q6ZNE9 571 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 RAVER2Q9HCJ3 691 aaKnown RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 SAR1BQ9Y6B6 198 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 MYO5CQ9NQX4 1742 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 ERBB4Q15303 1308 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 SFI1A8K8P3 1242 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 FOXD4Q12950 439 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 FAM83BQ5T0W9 1011 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 KRBA2Q6ZNG9 492 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 METTL14Q9HCE5 456 aaKnown RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 OLA1Q9NTK5 396 aaKnown RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 RGS16O15492 202 aaPredicted RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 ACTN1P12814 892 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 YWHAGP61981 247 aaKnown RBP eCLIP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 P3H4Q92791 437 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 ALKBH8Q96BT7 664 aaKnown RBP16.96■□□□□ 0.31
PTPRF-201ENST00000359947 OTUD5Q96G74 571 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 PPP1R12CQ9BZL4 782 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 TUBBP07437 444 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 MYO1EQ12965 1108 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 GRK7Q8WTQ7 553 aa16.96■□□□□ 0.31
PTPRF-201ENST00000359947 STX2P32856 288 aa16.96■□□□□ 0.3
PTPRF-201ENST00000359947 ADCK5Q3MIX3 580 aa16.96■□□□□ 0.3
PTPRF-201ENST00000359947 ATP6V1E2Q96A05 226 aa16.96■□□□□ 0.3
PTPRF-201ENST00000359947 PEG3Q9GZU2 1588 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 CTNNA1P35221 906 aaKnown RBP16.95■□□□□ 0.3
PTPRF-201ENST00000359947 PSMC2P35998 433 aaKnown RBP16.95■□□□□ 0.3
PTPRF-201ENST00000359947 ZSWIM6Q9HCJ5 1215 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 ZNF18P17022 549 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 SIX6OS1Q8N1H7 587 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 SYNE4Q8N205 404 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 CDHR1Q96JP9 859 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 PLCB1Q9NQ66 1216 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 COA1Q9GZY4 146 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 RPF1Q9H9Y2 349 aaKnown RBP16.95■□□□□ 0.3
PTPRF-201ENST00000359947 ABCC4O15439 1325 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 HEXIM1O94992 359 aaKnown RBP16.95■□□□□ 0.3
PTPRF-201ENST00000359947 GRAMD1CQ8IYS0 662 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 DNAAF3Q8N9W5 541 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 LMNB1P20700 586 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 ZMYM1Q5SVZ6 1142 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 WDR11Q9BZH6 1224 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 TM6SF1Q9BZW5 370 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 ATF2P15336 505 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 FAM186BQ8IYM0 893 aa16.95■□□□□ 0.3
PTPRF-201ENST00000359947 DENND3A2RUS2 1198 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 SNAP23O00161 211 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 PCP11498 1178 aaKnown RBP16.94■□□□□ 0.3
PTPRF-201ENST00000359947 JADE1Q6IE81 842 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 CATSPER4Q7RTX7 472 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 COPRSQ9NQ92 184 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 CFAP74Q9C0B2 1584 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 MYO1FO00160 1098 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 EPHB1P54762 984 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 ERO1AQ96HE7 468 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 SEPT6Q14141 434 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 CDO1Q16878 200 aa16.94■□□□□ 0.3
PTPRF-201ENST00000359947 TBC1D9BQ66K14 1250 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms