RNA–Protein interactions for RNA: ENST00000345512.7

PTPRU-201, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRU, Length 4,470 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-201ENST00000345512 CACNA2D3Q8IZS8 1091 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 SPATA4Q8NEY3 305 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 CELF1Q92879 486 aaKnown RBP17.06■□□□□ 0.32
PTPRU-201ENST00000345512 TMEM47Q9BQJ4 181 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 CCDC77Q9BR77 488 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 LRRC1Q9BTT6 524 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 FAM169AQ9Y6X4 670 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 POTEMA6NI47 508 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 MUM1L1Q5H9M0 696 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 SPATS2Q86XZ4 545 aaKnown RBP17.06■□□□□ 0.32
PTPRU-201ENST00000345512 EFCC1Q9HA90 598 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 PKD2L1Q9P0L9 805 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 ZBTB21Q9ULJ3 1066 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 SERPING1P05155 500 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 NR1D1P20393 614 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 GTF2IP78347 998 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 MAEAQ7L5Y9 396 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 GJA10Q969M2 543 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 RAB17Q9H0T7 212 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 XDHP47989 1333 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 MON2Q7Z3U7 1717 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 EXOC3O60645 756 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 SARSP49591 514 aaKnown RBP17.06■□□□□ 0.32
PTPRU-201ENST00000345512 CYP4A11Q02928 519 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 DDX12PQ92771 950 aa17.06■□□□□ 0.32
PTPRU-201ENST00000345512 ZNF622Q969S3 477 aaKnown RBP eCLIP17.06■□□□□ 0.32
PTPRU-201ENST00000345512 TARSL2A2RTX5 802 aaKnown RBP17.05■□□□□ 0.32
PTPRU-201ENST00000345512 PALMO75781 387 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 CTNNA2P26232 953 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 UNC13DQ70J99 1090 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 FMNL3Q8IVF7 1028 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 UBL4BQ8N7F7 174 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 UHMK1Q8TAS1 419 aaKnown RBP17.05■□□□□ 0.32
PTPRU-201ENST00000345512 FAM84BQ96KN1 310 aaPredicted RBP17.05■□□□□ 0.32
PTPRU-201ENST00000345512 SRGNP10124 158 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 MAP2K2P36507 400 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 TROAPQ12815 778 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 PABPC4Q13310 644 aaKnown RBP eCLIP17.05■□□□□ 0.32
PTPRU-201ENST00000345512 TRIM9Q9C026 710 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 ANKZF1Q9H8Y5 726 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 TCP10Q12799 353 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 STK4Q13043 487 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 TRAF1Q13077 416 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 CDKAL1Q5VV42 579 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 DENND2CQ68D51 928 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 CCDC50Q8IVM0 306 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 KIFC2Q96AC6 838 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 SNX12Q9UMY4 172 aa17.05■□□□□ 0.32
PTPRU-201ENST00000345512 PSMD14O00487 310 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 ORC4O43929 436 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 MSANTD4Q8NCY6 345 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 VIPAS39Q9H9C1 493 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 CCNI2Q6ZMN8 369 aaPredicted RBP17.04■□□□□ 0.32
PTPRU-201ENST00000345512 CCDC105Q8IYK2 499 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 SH3RF3Q8TEJ3 882 aaPredicted RBP17.04■□□□□ 0.32
PTPRU-201ENST00000345512 C8orf37Q96NL8 207 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 SLC16A2P36021 539 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 KLK7P49862 253 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 UBE2SQ16763 222 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 FAM98CQ17RN3 349 aaKnown RBP17.04■□□□□ 0.32
PTPRU-201ENST00000345512 GKAP1Q5VSY0 366 aaPredicted RBP17.04■□□□□ 0.32
PTPRU-201ENST00000345512 TPH2Q8IWU9 490 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 BICD1Q96G01 975 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 CYP2J2P51589 502 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 GSTA5Q7RTV2 222 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 AP1M1Q9BXS5 423 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 CCSER1Q9C0I3 900 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTPRU-201ENST00000345512 BARHL2Q9NY43 387 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 BAIAP2L1Q9UHR4 511 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 HPCAL4Q9UM19 191 aa17.04■□□□□ 0.32
PTPRU-201ENST00000345512 PEAK1Q9H792 1746 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 RGS16O15492 202 aaPredicted RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 EEF2P13639 858 aaKnown RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 EMILIN3Q9NT22 766 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 PCDHA1Q9Y5I3 950 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 CDK8P49336 464 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 EARS2Q5JPH6 523 aaKnown RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 NT5DC1Q5TFE4 455 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 ZNF34Q8IZ26 560 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 TBC1D22AQ8WUA7 517 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 RBM17Q96I25 401 aaKnown RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 TMEM60Q9H2L4 133 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 BAZ2BQ9UIF8 2168 aaKnown RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 PGRMC1O00264 195 aaKnown RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 MDM2Q00987 491 aaPredicted RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 ZRSR2Q15696 482 aaKnown RBP17.03■□□□□ 0.32
PTPRU-201ENST00000345512 PCDHA6Q9UN73 950 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 PCDHA8Q9Y5H6 950 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 CNTNAP5Q8WYK1 1306 aa17.03■□□□□ 0.32
PTPRU-201ENST00000345512 LRRIQ3A6PVS8 624 aaPredicted RBP17.02■□□□□ 0.32
PTPRU-201ENST00000345512 RHOBTB3O94955 611 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 ICE2Q659A1 982 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 WHAMMQ8TF30 809 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 USP40Q9NVE5 1235 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 PSMD2Q13200 908 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 GRM4Q14833 912 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 TMEM260Q9NX78 707 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 SMARCAL1Q9NZC9 954 aa17.02■□□□□ 0.32
PTPRU-201ENST00000345512 PACSIN2Q9UNF0 486 aaPredicted RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms