RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 LRRC37BQ96QE4 947 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 ZSCAN10Q96SZ4 725 aaPredicted RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 ZFP69BQ9UJL9 534 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 TNKSO95271 1327 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 LDHBP07195 334 aaKnown RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 PPP2R5CQ13362 524 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 SPATA5Q8NB90 893 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 KIF9Q9HAQ2 790 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 POLD4Q9HCU8 107 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 STK24Q9Y6E0 443 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 PLCH2O75038 1416 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 BACH1O14867 736 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 TEX33O43247 280 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 FGGP02679 453 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 ASPHQ12797 758 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 TOB2Q14106 344 aaPredicted RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 RPS6KA2Q15349 733 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 PRPF38AQ8NAV1 312 aaKnown RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 DPF2Q92785 391 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 LZTS2Q9BRK4 669 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 DNAJC17Q9NVM6 304 aaKnown RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 DENND2AQ9ULE3 1009 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 PACSIN2Q9UNF0 486 aaPredicted RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 MRC2Q9UBG0 1479 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 MMP1P03956 469 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 PLCG2P16885 1265 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 SNX24Q9Y343 169 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 NEURL1BA8MQ27 555 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 GIPC1O14908 333 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 NCK2O43639 380 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 DKC1O60832 514 aaKnown RBP eCLIP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 EIF4A1P60842 406 aaKnown RBP13.13□□□□□ -0.31
COL12A1-202ENST00000345356 KLC1Q07866 573 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 AIFM3Q96NN9 605 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 MMS19Q96T76 1030 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 SUGCTQ9HAC7 445 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 PCDHB6Q9Y5E3 794 aa13.13□□□□□ -0.31
COL12A1-202ENST00000345356 LSP1P33241 339 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 EIF6P56537 245 aaKnown RBP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 CDR2Q01850 454 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 TRIP13Q15645 432 aaPredicted RBP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 CHRNA2Q15822 529 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 ZNF790Q6PG37 636 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 PI4K2BQ8TCG2 481 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 GPKOWQ92917 476 aaPredicted RBP eCLIP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 DNAJC6O75061 913 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 SPARCL1Q14515 664 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 C10orf76Q5T2E6 689 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 CUEDC2Q9H467 287 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 GGT7Q9UJ14 662 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 ZNF518AQ6AHZ1 1483 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 SYCP2Q9BX26 1530 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 DNMT1P26358 1616 aaKnown RBP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 MT-ND3P03897 115 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 CCNE1P24864 410 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 ZMYM1Q5SVZ6 1142 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 TMEM154Q6P9G4 183 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 LRRC1Q9BTT6 524 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 MIS12Q9H081 205 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 TAF1DQ9H5J8 278 aaPredicted RBP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 NIP7Q9Y221 180 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 LMNB2Q03252 620 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 KRT28Q7Z3Y7 464 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 STAMBPL1Q96FJ0 436 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 CCDC68Q9H2F9 335 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 NDST4Q9H3R1 872 aa13.12□□□□□ -0.31
COL12A1-202ENST00000345356 DBNLQ9UJU6 430 aaKnown RBP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 URB2Q14146 1524 aaKnown RBP13.12□□□□□ -0.31
COL12A1-202ENST00000345356 LRRC14Q15048 493 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 TEX9Q8N6V9 391 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 ADAMTS1Q9UHI8 967 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 TTC4O95801 387 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 LRRC41Q15345 812 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 TRAIPQ9BWF2 469 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 FUT8Q9BYC5 575 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 G3BP2Q9UN86 482 aaKnown RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 KDRP35968 1356 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 ABCC12Q96J65 1359 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 EEF1B2P24534 225 aaKnown RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 NEK8Q86SG6 692 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 SPATA4Q8NEY3 305 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 SDCCAG3Q96C92 435 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 RPAP1Q9BWH6 1393 aaPredicted RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 CDC25AP30304 524 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 C1orf146Q5VVC0 180 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 LONP2Q86WA8 852 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 NBPF5PQ86XG9 351 aaPredicted RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 TTLL11Q8NHH1 800 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 TRIM55Q9BYV6 548 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 GLT8D2Q9H1C3 349 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 L2HGDHQ9H9P8 463 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 AATFQ9NY61 560 aaKnown RBP eCLIP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 LGALS16A8MUM7 142 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 PMS2P54278 862 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 SLC8A3P57103 927 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 TFAP4Q01664 338 aa13.11□□□□□ -0.31
COL12A1-202ENST00000345356 CCNI2Q6ZMN8 369 aaPredicted RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 ZCRB1Q8TBF4 217 aaKnown RBP13.11□□□□□ -0.31
COL12A1-202ENST00000345356 SEC16BQ96JE7 1060 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms