RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 CNGA1P29973 690 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 CACNB2Q08289 660 aaPredicted RBP13.56□□□□□ -0.24
SNCA-202ENST00000345009 STXBP2Q15833 593 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 MAP3K21Q5TCX8 1036 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 XRRA1Q6P2D8 792 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 USP17L6PQ6QN14 398 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 HSCBQ8IWL3 235 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 REXO1Q8N1G1 1221 aaKnown RBP13.56□□□□□ -0.24
SNCA-202ENST00000345009 SNX21Q969T3 373 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 ABHD8Q96I13 439 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 TAAR1Q96RJ0 339 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 ALG1Q9BT22 464 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 BRMS1Q9HCU9 246 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 VTA1Q9NP79 307 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 PXMP2Q9NR77 195 aa13.56□□□□□ -0.24
SNCA-202ENST00000345009 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.56□□□□□ -0.24
SNCA-202ENST00000345009 KIAA0100Q14667 2235 aaKnown RBP13.56□□□□□ -0.24
SNCA-202ENST00000345009 ZSWIM8A7E2V4 1837 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 CTDNEP1O95476 244 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 NR3C2P08235 984 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 CCL5P13501 91 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 AP3B2Q13367 1082 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 ACVR2BQ13705 512 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 SAFBQ15424 915 aaKnown RBP eCLIP13.55□□□□□ -0.24
SNCA-202ENST00000345009 MORC4Q8TE76 937 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 VPS54Q9P1Q0 977 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 ZHX1Q9UKY1 873 aaPredicted RBP13.55□□□□□ -0.24
SNCA-202ENST00000345009 FAM184BQ9ULE4 1060 aa13.55□□□□□ -0.24
SNCA-202ENST00000345009 C2orf72A6NCS6 295 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 SEPT4O43236 478 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 STAM2O75886 525 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 SNAI1O95863 264 aaPredicted RBP13.54□□□□□ -0.24
SNCA-202ENST00000345009 MYCP01106 439 aaPredicted RBP13.54□□□□□ -0.24
SNCA-202ENST00000345009 IGHA2P01877 340 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 EIF2AK2P19525 551 aaKnown RBP13.54□□□□□ -0.24
SNCA-202ENST00000345009 CCND2P30279 289 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 IQSEC1Q6DN90 963 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 TYW1BQ6NUM6 668 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 ZNF710Q8N1W2 664 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 FGD4Q96M96 766 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 PURBQ96QR8 312 aaKnown RBP13.54□□□□□ -0.24
SNCA-202ENST00000345009 PCDHA6Q9UN73 950 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 PCDHA4Q9UN74 947 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 SMC3Q9UQE7 1217 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 PCDHA8Q9Y5H6 950 aa13.54□□□□□ -0.24
SNCA-202ENST00000345009 CCDC85CA6NKD9 419 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 K7ELQ4 463 aaPredicted RBP13.53□□□□□ -0.24
SNCA-202ENST00000345009 JAK2O60674 1132 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 CD2BP2O95400 341 aaKnown RBP13.53□□□□□ -0.24
SNCA-202ENST00000345009 HSP90AA1P07900 732 aaKnown RBP13.53□□□□□ -0.24
SNCA-202ENST00000345009 GJB1P08034 283 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 MYCLP12524 364 aaPredicted RBP13.53□□□□□ -0.24
SNCA-202ENST00000345009 CYBAP13498 195 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 AKR1A1P14550 325 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 EDNRBP24530 442 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 TRIM32Q13049 653 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 PGM5Q15124 567 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 GNPTABQ3T906 1256 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 PRAMEF19Q5SWL8 479 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 KCNV1Q6PIU1 500 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 VSIG10LQ86VR7 867 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 SPRYD3Q8NCJ5 442 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 SCFD2Q8WU76 684 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 C8orf76Q96K31 380 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 PDCD2LQ9BRP1 358 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.53□□□□□ -0.24
SNCA-202ENST00000345009 UNC93B1Q9H1C4 597 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 SPC25Q9HBM1 224 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 COL20A1Q9P218 1284 aa13.53□□□□□ -0.24
SNCA-202ENST00000345009 TFRCP02786 760 aaKnown RBP13.52□□□□□ -0.25
SNCA-202ENST00000345009 RARBP10826 455 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 FDPSP14324 419 aaKnown RBP13.52□□□□□ -0.25
SNCA-202ENST00000345009 MTFR1Q15390 333 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 UBE2SQ16763 222 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 CCDC144BQ3MJ40 725 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 JAKMIP3Q5VZ66 844 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 PCNX4Q63HM2 1172 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 EEPD1Q7L9B9 569 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 BLIDQ8IZY5 108 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 INTS4Q96HW7 963 aaKnown RBP13.52□□□□□ -0.25
SNCA-202ENST00000345009 CDHR1Q96JP9 859 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 DEFB118Q96PH6 123 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 PAK6Q9NQU5 681 aaPredicted RBP13.52□□□□□ -0.25
SNCA-202ENST00000345009 DDX20Q9UHI6 824 aaKnown RBP13.52□□□□□ -0.25
SNCA-202ENST00000345009 PLXNA1Q9UIW2 1896 aa13.52□□□□□ -0.25
SNCA-202ENST00000345009 ASTN1O14525 1302 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 CCDC194A0A1B0GVG4 234 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 ZNF865P0CJ78 1059 aaPredicted RBP13.51□□□□□ -0.25
SNCA-202ENST00000345009 TGFB3P10600 412 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 PDCP20941 246 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 CCND3P30281 292 aaPredicted RBP13.51□□□□□ -0.25
SNCA-202ENST00000345009 ZNF76P36508 570 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 TNFAIP2Q03169 654 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 CUL4AQ13619 759 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 BECN1Q14457 450 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 TTLL4Q14679 1199 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 KRT25Q7Z3Z0 450 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 NLRX1Q86UT6 975 aa13.51□□□□□ -0.25
SNCA-202ENST00000345009 FBXO16Q8IX29 292 aaPredicted RBP13.51□□□□□ -0.25
SNCA-202ENST00000345009 DAGLBQ8NCG7 672 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms