RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 LAMC2Q13753 1193 aa20.55■□□□□ 0.88
TPM1-203ENST00000317516 NECTIN1Q15223 517 aa20.55■□□□□ 0.88
TPM1-203ENST00000317516 CREB3L3Q68CJ9 461 aa20.55■□□□□ 0.88
TPM1-203ENST00000317516 VSIG10LQ86VR7 867 aa20.55■□□□□ 0.88
TPM1-203ENST00000317516 AFG1LQ8WV93 481 aa20.55■□□□□ 0.88
TPM1-203ENST00000317516 RRP36Q96EU6 259 aaKnown RBP20.55■□□□□ 0.88
TPM1-203ENST00000317516 DDX41Q9UJV9 622 aaKnown RBP20.55■□□□□ 0.88
TPM1-203ENST00000317516 LIFRP42702 1097 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 ARHGAP1Q07960 439 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 DGKDQ16760 1214 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 SLC35G1Q2M3R5 365 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 FCHSD1Q86WN1 690 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 DHX37Q8IY37 1157 aaKnown RBP20.54■□□□□ 0.88
TPM1-203ENST00000317516 SPZ1Q9BXG8 430 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 TRMT13Q9NUP7 481 aaKnown RBP20.54■□□□□ 0.88
TPM1-203ENST00000317516 SEC63Q9UGP8 760 aaKnown RBP20.54■□□□□ 0.88
TPM1-203ENST00000317516 NOD1Q9Y239 953 aa20.54■□□□□ 0.88
TPM1-203ENST00000317516 LRRC37A2A6NM11 1700 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 LCTP09848 1927 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 MMP3P08254 477 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 TGFB3P10600 412 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 CCND2P30279 289 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 CHMP4BP1P59074 171 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 RETREG2Q8NC44 543 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 PIBF1Q8WXW3 757 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 HERVK_113Q902F9 699 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 EMID1Q96A84 441 aaPredicted RBP20.53■□□□□ 0.88
TPM1-203ENST00000317516 GUCD1Q96NT3 240 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 SLC12A7Q9Y666 1083 aa20.53■□□□□ 0.88
TPM1-203ENST00000317516 SH2B2O14492 632 aaPredicted RBP20.52■□□□□ 0.88
TPM1-203ENST00000317516 CYP2C9P11712 490 aa20.52■□□□□ 0.88
TPM1-203ENST00000317516 PGM5Q15124 567 aa20.52■□□□□ 0.88
TPM1-203ENST00000317516 RASIP1Q5U651 963 aa20.52■□□□□ 0.88
TPM1-203ENST00000317516 SYNE3Q6ZMZ3 975 aa20.52■□□□□ 0.88
TPM1-203ENST00000317516 CUL5Q93034 780 aa20.52■□□□□ 0.88
TPM1-203ENST00000317516 MYL10Q9BUA6 226 aa20.52■□□□□ 0.88
TPM1-203ENST00000317516 UMODL1Q5DID0 1318 aa20.52■□□□□ 0.87
TPM1-203ENST00000317516 PFKMP08237 780 aa20.51■□□□□ 0.87
TPM1-203ENST00000317516 DNAJB2P25686 324 aa20.51■□□□□ 0.87
TPM1-203ENST00000317516 BFSP2Q13515 415 aa20.51■□□□□ 0.87
TPM1-203ENST00000317516 PPTC7Q8NI37 304 aa20.51■□□□□ 0.87
TPM1-203ENST00000317516 CDX2Q99626 313 aaPredicted RBP20.51■□□□□ 0.87
TPM1-203ENST00000317516 KATNAL1Q9BW62 490 aa20.51■□□□□ 0.87
TPM1-203ENST00000317516 STAM2O75886 525 aa20.5■□□□□ 0.87
TPM1-203ENST00000317516 GNPTABQ3T906 1256 aa20.5■□□□□ 0.87
TPM1-203ENST00000317516 SMARCC2Q8TAQ2 1214 aa20.5■□□□□ 0.87
TPM1-203ENST00000317516 WNT8AQ9H1J5 351 aa20.5■□□□□ 0.87
TPM1-203ENST00000317516 TTYH1Q9H313 450 aaPredicted RBP20.5■□□□□ 0.87
TPM1-203ENST00000317516 PITPNM1O00562 1244 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 PPFIA4O75335 1185 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 CDC45O75419 566 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 RFC2P35250 354 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 PTGISQ16647 500 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 CELF3Q5SZQ8 465 aaKnown RBP20.49■□□□□ 0.87
TPM1-203ENST00000317516 OTOP2Q7RTS6 562 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 SESTD1Q86VW0 696 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 CCDC155Q8N6L0 562 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 TIFAQ96CG3 184 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 SCLYQ96I15 445 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 CCDC136Q96JN2 1154 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 NEK1Q96PY6 1258 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 MLXIPQ9HAP2 919 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 MSRAQ9UJ68 235 aa20.49■□□□□ 0.87
TPM1-203ENST00000317516 RGS20O76081 388 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 KRT32Q14532 448 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 MYSM1Q5VVJ2 828 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 SKAP1Q86WV1 359 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 SRBD1Q8N5C6 995 aaKnown RBP20.48■□□□□ 0.87
TPM1-203ENST00000317516 C7orf31Q8N865 590 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 FANCBQ8NB91 859 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 SPATA33Q96N06 139 aa20.48■□□□□ 0.87
TPM1-203ENST00000317516 GGPS1O95749 300 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 ACTN1P12814 892 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 RAB30Q15771 203 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 XRRA1Q6P2D8 792 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 SGMS1Q86VZ5 419 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 IL31RAQ8NI17 732 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 KAT2BQ92831 832 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 ZNF576Q9H609 170 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 SLC4A7Q9Y6M7 1214 aa20.47■□□□□ 0.87
TPM1-203ENST00000317516 PIK3CDO00329 1044 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 PLEKHA8P1O95397 391 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 IQCF3P0C7M6 154 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 RXRAP19793 462 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 PSEN2P49810 448 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 TSGA10IPQ3SY00 556 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 DHX32Q7L7V1 743 aaKnown RBP20.46■□□□□ 0.87
TPM1-203ENST00000317516 DEFB128Q7Z7B8 93 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 CAGE1Q8TC20 777 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 PPP1R13LQ8WUF5 828 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 LRRC2Q9BYS8 371 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 PBX4Q9BYU1 374 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 PSTPIP2Q9H939 334 aa20.46■□□□□ 0.87
TPM1-203ENST00000317516 CXXC1Q9P0U4 656 aaPredicted RBP20.46■□□□□ 0.87
TPM1-203ENST00000317516 ZBBXA8MT70 800 aa20.45■□□□□ 0.86
TPM1-203ENST00000317516 GRXCR1A8MXD5 290 aa20.45■□□□□ 0.86
TPM1-203ENST00000317516 F2P00734 622 aa20.45■□□□□ 0.86
TPM1-203ENST00000317516 HMGB1P09429 215 aaKnown RBP20.45■□□□□ 0.86
TPM1-203ENST00000317516 HOXD8P13378 290 aaPredicted RBP20.45■□□□□ 0.86
TPM1-203ENST00000317516 NEDD9Q14511 834 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms