RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	RSR1	P13856	272 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	MSS116	P15424	664 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	PDE1	P22434	369 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	CIN8	P27895	1000 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	RPC82	P32349	654 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	UGP1	P32861	499 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	THI80	P35202	319 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	LRG1	P35688	1017 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	MRP8	P35719	219 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	ALY1	P36117	915 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	ROT2	P38138	954 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	TDP1	P38319	544 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	YHL012W	P38709	493 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	PEX28	P38848	579 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	5.92	□□□□□ -1.46	not detected
RPT3	YDR394W	DHH1	P39517	506 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	YAR028W	P39548	234 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	NPT1	P39683	429 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	ECM10	P39987	644 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	YER034W	P40022	185 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	CAB2	P40506	365 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	VHR1	P40522	640 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	TES1	P41903	349 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	AMA1	P50082	593 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	YNL095C	P53932	642 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	TOF2	Q02208	771 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	YMR206W	Q03695	313 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	ECM11	Q04110	302 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	YMR111C	Q04461	462 aa	Predicted RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	YMR226C	Q05016	267 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	RSA3	Q05942	220 aa	Known RBP	5.92	□□□□□ -1.46
RPT3	YDR394W	YOR387C	Q08910	206 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	YLR046C	Q12253	270 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	PSY3	Q12318	242 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	NSI1	Q12457	570 aa		5.92	□□□□□ -1.46
RPT3	YDR394W	THP2	O13539	261 aa	Known RBP	5.91	□□□□□ -1.46
RPT3	YDR394W	SUI3	P09064	285 aa	Known RBP	5.91	□□□□□ -1.46
RPT3	YDR394W	FBA1	P14540	359 aa	Known RBP	5.91	□□□□□ -1.46
RPT3	YDR394W	TYR1	P20049	452 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	FAR1	P21268	830 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	DAL81	P21657	970 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	MNE1	P24720	663 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	DMC1	P25453	334 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	GEX1	P25596	615 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	STE14	P32584	239 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	PEX6	P33760	1030 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	YKR015C	P36111	568 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	SKG1	P36169	355 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	GEX2	P36173	615 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	AYR1	P40471	297 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	BNA3	P47039	444 aa	Known RBP	5.91	□□□□□ -1.46
RPT3	YDR394W	AIM14	P53109	570 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	DCP2	P53550	970 aa	Known RBP	5.91	□□□□□ -1.46
RPT3	YDR394W	SKI8	Q02793	397 aa	Predicted RBP	5.91	□□□□□ -1.46
RPT3	YDR394W	PNG1	Q02890	363 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	YPR114W	Q06107	315 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	VTA1	Q06263	330 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	NDD1	Q08887	554 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	TGL5	Q12043	749 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	HUA2	Q12134	243 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	YOR342C	Q12182	319 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	YOR012W	Q12351	137 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	GTT2	Q12390	233 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	YOR338W	Q99326	363 aa		5.91	□□□□□ -1.46
RPT3	YDR394W	UBR2	Q07963	1872 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	RPS9A	O13516	197 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	SEM1	O94742	89 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	SUC2	P00724	532 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	SPS1	P08458	490 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	HEM13	P11353	328 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	HMG2	P12684	1045 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	MRP13	P12686	339 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	KSS1	P14681	368 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	PMA2	P19657	947 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	OCA4	P25366	362 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	BRF1	P29056	596 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	CRM1	P30822	1084 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	FUN30	P31380	1131 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	TIP20	P33891	701 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	TIF3	P34167	436 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	PHO11	P35842	467 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	MRPL17	P36528	281 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	PHO12	P38693	467 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	YHR218W	P38899	603 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	GIP4	P39732	760 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	RPH1	P39956	796 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	ARB1	P40024	610 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	JHD1	P40034	492 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	PAN6	P40459	309 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	MPH1	P40562	993 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	YIR016W	P40572	265 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	GCN20	P43535	752 aa	Known RBP	5.9	□□□□□ -1.46
RPT3	YDR394W	GTO1	P48239	356 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	SPC105	P53148	917 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	ARP4	P80428	489 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	UGO1	Q03327	502 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	RAD30	Q04049	632 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	YDR124W	Q04608	324 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	BCH1	Q05029	724 aa		5.9	□□□□□ -1.46
RPT3	YDR394W	NDL1	Q06568	189 aa		5.9	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 21.7 ms