RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	SHC1	P39000	512 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	SCC4	P40090	624 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	DOT5	P40553	215 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	BRO1	P48582	844 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	YGL138C	P53122	345 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	VAC7	P53950	1165 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	APM1	Q00776	475 aa	Predicted RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	YSA1	Q01976	231 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	ECM5	Q03214	1411 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	GFD1	Q04839	188 aa	Known RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	IWR1	Q07532	353 aa	Predicted RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	DNL4	Q08387	944 aa	Predicted RBP	4.59	□□□□□ -1.67
KIN28	YDL108W	ICL2	Q12031	575 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	YDL109C	Q12103	647 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	SRN2	Q99176	213 aa		4.59	□□□□□ -1.67
KIN28	YDL108W	YLR278C	Q05854	1341 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	GAL4	P04386	881 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	WHI2	P12611	486 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	PRP16	P15938	1071 aa	Predicted RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	BEM1	P29366	551 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	CRM1	P30822	1084 aa	Known RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	EMP70	P32802	667 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	PRS1	P32895	427 aa	Known RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	YBL055C	P34220	418 aa	Predicted RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	VMA22	P38784	181 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	YEL020C	P39994	560 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	YER085C	P40058	173 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	ARC1	P46672	376 aa	Known RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	COQ6	P53318	479 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	YNL181W	P53878	407 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	RHO5	P53879	331 aa	Known RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	SAM50	P53969	484 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	YMR102C	Q03177	834 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	BNA7	Q04066	261 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	GMC2	Q06201	188 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	SEC10	Q06245	871 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	ARO10	Q06408	635 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	ULA1	Q12059	462 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	GET4	Q12125	312 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	COX17	Q12287	69 aa		4.58	□□□□□ -1.68
KIN28	YDL108W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.58	□□□□□ -1.68
KIN28	YDL108W	VPS63	O13549	108 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	RPL19A	P0CX82	189 aa	Known RBP	4.57	□□□□□ -1.68
KIN28	YDL108W	RPL19B	P0CX83	189 aa	Predicted RBP	4.57	□□□□□ -1.68
KIN28	YDL108W	YPK1	P12688	680 aa	Known RBP	4.57	□□□□□ -1.68
KIN28	YDL108W	RNR3	P21672	869 aa	Known RBP	4.57	□□□□□ -1.68
KIN28	YDL108W	SAT4	P25333	603 aa	Known RBP	4.57	□□□□□ -1.68
KIN28	YDL108W	MCM4	P30665	933 aa	Known RBP	4.57	□□□□□ -1.68
KIN28	YDL108W	AFG3	P39925	761 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	SSO2	P39926	295 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	PCL6	P40038	420 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	BNA6	P43619	295 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	SIP4	P46954	829 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	CPR8	P53728	308 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	NGL3	Q03210	505 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	RAD30	Q04049	632 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	ARP10	Q04549	284 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	ENT4	Q07872	247 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	AEP3	Q12089	606 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	NBL1	Q3E7Y6	73 aa		4.57	□□□□□ -1.68
KIN28	YDL108W	SSA3	P09435	649 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	SAM1	P10659	382 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	SWI4	P25302	1093 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	ADY2	P25613	283 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	YCR061W	P25639	631 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	RAD14	P28519	371 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	CDC5	P32562	705 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	UGP1	P32861	499 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	CYM1	P32898	989 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	RRP1	P35178	278 aa	Predicted RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	YKL071W	P36086	256 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	YKL070W	P36087	169 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	ATP3	P38077	311 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	YMR262W	P38430	313 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	CAK1	P43568	368 aa	Predicted RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	YHC3	P47040	408 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	URB2	P47108	1174 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	TIM21	P53220	239 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	SLX9	P53251	210 aa	Predicted RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	DRN1	P53255	507 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	SSU72	P53538	206 aa	Predicted RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	PRM1	P53835	661 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	YNL143C	P53908	130 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	ATG21	Q02887	496 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	ARG7	Q04728	441 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	CUR1	Q06469	252 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	ATG23	Q06671	453 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	AIM6	Q07716	390 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	CRT10	Q08226	957 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	NMD4	Q12129	218 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	LEU9	Q12166	604 aa	Known RBP	4.56	□□□□□ -1.68
KIN28	YDL108W	SUT2	Q12286	268 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	YER175W-A	Q8TGU4	54 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	MTR10	Q99189	972 aa		4.56	□□□□□ -1.68
KIN28	YDL108W	AAC1	P04710	309 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	VPS1	P21576	704 aa	Known RBP	4.55	□□□□□ -1.68
KIN28	YDL108W	APA2	P22108	325 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	PPZ2	P33329	710 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	LHS1	P36016	881 aa		4.55	□□□□□ -1.68
KIN28	YDL108W	VPS51	P36116	164 aa		4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 205.2 ms