RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NFX1Q12986 1120 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 USPL1Q5W0Q7 1092 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 PDXDC2PQ6P474 469 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ANKS3Q6ZW76 656 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 DYMQ7RTS9 669 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 SNX19Q92543 992 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 RUNDC3BQ96NL0 473 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 SUGT1Q9Y2Z0 365 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TRAPPC8Q9Y2L5 1435 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CUTAO60888 179 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ADRA2BP18089 450 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 BFSP1Q12934 665 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 BTBD8Q5XKL5 378 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ADAT2Q7Z6V5 191 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 VPS37BQ9H9H4 285 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ZBTB7AO95365 584 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 LRMPQ12912 555 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TUBB2AQ13885 445 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TUBB2BQ9BVA1 445 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ABCF3Q9NUQ8 709 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 UGGT1Q9NYU2 1555 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF608Q9ULD9 1512 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 PRXQ9BXM0 1461 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TFAMQ00059 246 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 KRT17Q04695 432 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 GTF2H3Q13889 308 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CATSPER4Q7RTX7 472 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ZSCAN30Q86W11 494 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 SPICE1Q8N0Z3 855 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 COG4Q9H9E3 785 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 METTL14Q9HCE5 456 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 EPS15L1Q9UBC2 864 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 INPP5FQ9Y2H2 1132 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ARHGAP6O43182 974 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 KDM1AO60341 852 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 EVI5O60447 810 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 NSFP46459 744 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 RABGGTAQ92696 567 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 SH3KBP1Q96B97 665 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ZNF594Q96JF6 807 aaPredicted RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 LRGUKQ96M69 825 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 NLRP4Q96MN2 994 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 PPP1R9AQ9ULJ8 1098 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 H7C0C1 242 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 MARK3P27448 753 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 PHKA2P46019 1235 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ATP5OP48047 213 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TIMM10P62072 90 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 C8orf74Q6P047 294 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ARHGEF2Q92974 986 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CHD1O14646 1710 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 GSTA4O15217 222 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TTI1O43156 1089 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CAPN15O75808 1086 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CHEK2O96017 543 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 MMP10P09238 476 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 GAP43P17677 238 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 MFAP3P55082 362 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 EVCP57679 992 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 DNAAF3Q8N9W5 541 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 BBOF1Q8ND07 529 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 CCHCR1Q8TD31 782 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 TEKT4Q8WW24 435 aa6.66□□□□□ -1.34
SCN1A-217ENST00000637988 PARK7Q99497 189 aaKnown RBP6.66□□□□□ -1.34
SCN1A-217ENST00000637988 ARAP3Q8WWN8 1544 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 PRDM1O75626 825 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 BMP3P12645 472 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 MTMR3Q13615 1198 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 ARHGAP15Q53QZ3 475 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 SLC10A5Q5PT55 438 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 ARMC6Q6NXE6 501 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 MYOCDQ8IZQ8 938 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 DDX17Q92841 729 aaKnown RBP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 IFT43Q96FT9 208 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 MFSD1Q9H3U5 465 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 OLFML3Q9NRN5 406 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 FAM50BQ9Y247 325 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 NPHP4O75161 1426 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 A6NNZ2 444 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 IKBKBO14920 756 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 IFNB1P01574 187 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 TUBB8Q3ZCM7 444 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 FAM47AQ5JRC9 791 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 SLFN12LQ6IEE8 588 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 USP17L2Q6R6M4 530 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 ENOX1Q8TC92 643 aaKnown RBP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 SPATA17Q96L03 361 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 CEP170P1Q96L14 293 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 FOPNLQ96NB1 174 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 FAM49AQ9H0Q0 323 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 SMYD2Q9NRG4 433 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 STRIP2Q9ULQ0 834 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 KDM5DQ9BY66 1539 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 KLRF2D3W0D1 207 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 MCF2LO15068 1137 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 DDAH1O94760 285 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 PHEXP78562 749 aa6.65□□□□□ -1.34
SCN1A-217ENST00000637988 RWDD4Q6NW29 188 aaKnown RBP6.65□□□□□ -1.34
SCN1A-217ENST00000637988 NEK8Q86SG6 692 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms