RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 DAGLBQ8NCG7 672 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 INTS4Q96HW7 963 aaKnown RBP18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 ALG1Q9BT22 464 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 HMX1Q9NP08 348 aaPredicted RBP18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 VTA1Q9NP79 307 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 PXMP2Q9NR77 195 aa18.99■□□□□ 0.63
SHKBP1-219ENST00000599575 MYH6P13533 1939 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 PRKAR2AP13861 404 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 HOXA13P31271 388 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 CYP2C19P33261 490 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 CLK2P49760 499 aaKnown RBP18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 NLRP5P59047 1200 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 CACNB2Q08289 660 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 PDE4DQ08499 809 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 TRIM29Q14134 588 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 STXBP2Q15833 593 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 USP17L6PQ6QN14 398 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 HSCBQ8IWL3 235 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 FAM184AQ8NB25 1140 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 SH3TC2Q8TF17 1288 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 TAAR1Q96RJ0 339 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 VPS54Q9P1Q0 977 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 COL20A1Q9P218 1284 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 PCDHA4Q9UN74 947 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 DOCK3Q8IZD9 2030 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 ASTN1O14525 1302 aa18.98■□□□□ 0.63
SHKBP1-219ENST00000599575 EIF3JO75822 258 aaKnown RBP18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 SNAI1O95863 264 aaPredicted RBP18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 CYBAP13498 195 aa18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 VSIG10LQ86VR7 867 aa18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 TNS4Q8IZW8 715 aa18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 PDCD2LQ9BRP1 358 aa18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 PHF20Q9BVI0 1012 aa18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 BRMS1Q9HCU9 246 aa18.97■□□□□ 0.63
SHKBP1-219ENST00000599575 JAK2O60674 1132 aa18.96■□□□□ 0.63
SHKBP1-219ENST00000599575 PPFIA3O75145 1194 aa18.96■□□□□ 0.63
SHKBP1-219ENST00000599575 NR3C2P08235 984 aa18.96■□□□□ 0.63
SHKBP1-219ENST00000599575 ACVR2BQ13705 512 aa18.96■□□□□ 0.63
SHKBP1-219ENST00000599575 FCHSD1Q86WN1 690 aa18.96■□□□□ 0.63
SHKBP1-219ENST00000599575 RBBP6Q7Z6E9 1792 aaKnown RBP18.96■□□□□ 0.63
SHKBP1-219ENST00000599575 SEPT4O43236 478 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 CCND2P30279 289 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 PGM5Q15124 567 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 PCNX4Q63HM2 1172 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 KCNV1Q6PIU1 500 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 BLIDQ8IZY5 108 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 TMEM106CQ9BVX2 250 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 PAK6Q9NQU5 681 aaPredicted RBP18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 PCDHA6Q9UN73 950 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 SMC3Q9UQE7 1217 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 PCDHA8Q9Y5H6 950 aa18.95■□□□□ 0.62
SHKBP1-219ENST00000599575 GJB1P08034 283 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 ZNF865P0CJ78 1059 aaPredicted RBP18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 CCL5P13501 91 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 PDIA4P13667 645 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 AKR1A1P14550 325 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 EIF2AK2P19525 551 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 SAFBQ15424 915 aaKnown RBP eCLIP18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 IQSEC1Q6DN90 963 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 ABHD8Q96I13 439 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 PURBQ96QR8 312 aaKnown RBP18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 KATNBL1Q9H079 304 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 XRN2Q9H0D6 950 aaKnown RBP eCLIP18.94■□□□□ 0.629e-6■■■■■ 32.4
SHKBP1-219ENST00000599575 FAM184BQ9ULE4 1060 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 SMCHD1A6NHR9 2005 aa18.94■□□□□ 0.62
SHKBP1-219ENST00000599575 RBM47A0AV96 593 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 MAFGO15525 162 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 MMP1P03956 469 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 TGFB3P10600 412 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 PDCP20941 246 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 SREBF1P36956 1147 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 UBE2SQ16763 222 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 GNPTABQ3T906 1256 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 FBXO18Q8NFZ0 1043 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 SCFD2Q8WU76 684 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 C8orf76Q96K31 380 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 AIFM3Q96NN9 605 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 ANO3Q9BYT9 981 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 RNF208Q9H0X6 261 aa18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 ZNFX1Q9P2E3 1918 aaKnown RBP18.93■□□□□ 0.62
SHKBP1-219ENST00000599575 M0R2N6 131 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 NKRFO15226 690 aaKnown RBP eCLIP18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 TRIM32Q13049 653 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 NPY5RQ15761 445 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 KRT25Q7Z3Z0 450 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 SHISA4Q96DD7 197 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 CDHR1Q96JP9 859 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 DDX20Q9UHI6 824 aaKnown RBP18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 ZHX1Q9UKY1 873 aaPredicted RBP18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 Q9Y3F1 56 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 PLXNA1Q9UIW2 1896 aa18.92■□□□□ 0.62
SHKBP1-219ENST00000599575 CYP3A4P08684 503 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 KRT2P35908 639 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 USP11P51784 963 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 BECN1Q14457 450 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 KRT40Q6A162 431 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 TAPT1Q6NXT6 567 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 TRPV1Q8NER1 839 aa18.91■□□□□ 0.62
SHKBP1-219ENST00000599575 INPP4AQ96PE3 977 aaPredicted RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms