RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 PPP4R3AQ6IN85 833 aa17.56■□□□□ 0.4
UPF1-206ENST00000598471 MOXD1Q6UVY6 613 aa17.56■□□□□ 0.4
UPF1-206ENST00000598471 IFNL1Q8IU54 200 aa17.56■□□□□ 0.4
UPF1-206ENST00000598471 REM2Q8IYK8 340 aaPredicted RBP17.56■□□□□ 0.4
UPF1-206ENST00000598471 ANKRD35Q8N283 1001 aa17.56■□□□□ 0.4
UPF1-206ENST00000598471 SYTL5Q8TDW5 730 aaPredicted RBP17.56■□□□□ 0.4
UPF1-206ENST00000598471 MORF4L1Q9UBU8 362 aa17.56■□□□□ 0.4
UPF1-206ENST00000598471 TCHHQ07283 1943 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 IGF2BP3O00425 579 aaKnown RBP eCLIP17.55■□□□□ 0.4
UPF1-206ENST00000598471 NEMFO60524 1076 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 ERCC3P19447 782 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 ATP2C1P98194 919 aaPredicted RBP17.55■□□□□ 0.4
UPF1-206ENST00000598471 PTGDRQ13258 359 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 BAATQ14032 418 aaPredicted RBP17.55■□□□□ 0.4
UPF1-206ENST00000598471 TAF1CQ15572 869 aaPredicted RBP17.55■□□□□ 0.4
UPF1-206ENST00000598471 POTEEQ6S8J3 1075 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 SLC30A10Q6XR72 485 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.55■□□□□ 0.4
UPF1-206ENST00000598471 CCAR1Q8IX12 1150 aaKnown RBP17.55■□□□□ 0.4
UPF1-206ENST00000598471 KRI1Q8N9T8 703 aaKnown RBP17.55■□□□□ 0.4
UPF1-206ENST00000598471 FERMT2Q96AC1 680 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 TXNRD2Q9NNW7 524 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 WBP1LQ9NX94 342 aa17.55■□□□□ 0.4
UPF1-206ENST00000598471 CUTAO60888 179 aa17.54■□□□□ 0.4
UPF1-206ENST00000598471 CYP3A4P08684 503 aa17.54■□□□□ 0.4
UPF1-206ENST00000598471 MARCKSP29966 332 aaPredicted RBP17.54■□□□□ 0.4
UPF1-206ENST00000598471 ZNF76P36508 570 aa17.54■□□□□ 0.4
UPF1-206ENST00000598471 FAM110CQ1W6H9 321 aa17.54■□□□□ 0.4
UPF1-206ENST00000598471 ARL6IP4Q66PJ3 421 aaKnown RBP17.54■□□□□ 0.4
UPF1-206ENST00000598471 ANKRD13CQ8N6S4 541 aa17.54■□□□□ 0.4
UPF1-206ENST00000598471 A1CFQ9NQ94 594 aaKnown RBP17.54■□□□□ 0.4
UPF1-206ENST00000598471 CYP39A1Q9NYL5 469 aa17.54■□□□□ 0.4
UPF1-206ENST00000598471 DDX49Q9Y6V7 483 aaKnown RBP17.54■□□□□ 0.4
UPF1-206ENST00000598471 RPTORQ8N122 1335 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 WNT7AO00755 349 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 ALDH1A1P00352 501 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 OR52Z1P0C646 297 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 TM4SF4P48230 202 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 KCTD2Q14681 263 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 WDR78Q5VTH9 848 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 ADALQ6DHV7 355 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 CRYGNQ8WXF5 182 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 RMDN3Q96TC7 470 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 ZFYVE28Q9HCC9 887 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 DDX25Q9UHL0 483 aaKnown RBP17.53■□□□□ 0.4
UPF1-206ENST00000598471 PCDHA7Q9UN72 937 aa17.53■□□□□ 0.4
UPF1-206ENST00000598471 SRPRBQ9Y5M8 271 aaKnown RBP17.53■□□□□ 0.4
UPF1-206ENST00000598471 FRMPD4Q14CM0 1322 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 SMCHD1A6NHR9 2005 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 CYP3A7-CYP3A51PA0A087WV96 503 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 A0A1W2PQ27 194 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 A0A1W2PQ64 194 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 A0A1W2PQD8 194 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 MARCH6O60337 910 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 PEX10O60683 326 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 GADD45BO75293 160 aaPredicted RBP17.52■□□□□ 0.4
UPF1-206ENST00000598471 TDP2O95551 362 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 HSPA1AP0DMV8 641 aaKnown RBP17.52■□□□□ 0.4
UPF1-206ENST00000598471 HSPA1BP0DMV9 641 aaKnown RBP17.52■□□□□ 0.4
UPF1-206ENST00000598471 PTPREP23469 700 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 CYP3A7P24462 503 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 CIITAP33076 1130 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 PRPHP41219 470 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 MAP2K1Q02750 393 aaPredicted RBP17.52■□□□□ 0.4
UPF1-206ENST00000598471 CALCRLQ16602 461 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 ARHGEF16Q5VV41 709 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 XRRA1Q6P2D8 792 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 NSUN6Q8TEA1 469 aaKnown RBP17.52■□□□□ 0.4
UPF1-206ENST00000598471 MMP19Q99542 508 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 COL20A1Q9P218 1284 aa17.52■□□□□ 0.4
UPF1-206ENST00000598471 FBXO2Q9UK22 296 aaPredicted RBP17.52■□□□□ 0.4
UPF1-206ENST00000598471 B4DLN1 442 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 POTEB2H3BUK9 544 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 FCER1AP12319 257 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 Q3C1V9 767 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 Q4G0T1 1027 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 TPRNQ4KMQ1 711 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 PCNX4Q63HM2 1172 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 DTHD1Q6ZMT9 781 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 CCDC73Q6ZRK6 1079 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 DNERQ8NFT8 737 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 MRPS27Q92552 414 aaKnown RBP17.51■□□□□ 0.39
UPF1-206ENST00000598471 MBOAT7Q96N66 472 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 TAAR1Q96RJ0 339 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 MPHOSPH6Q99547 160 aaKnown RBP17.51■□□□□ 0.39
UPF1-206ENST00000598471 PXMP2Q9NR77 195 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 ADD3Q9UEY8 706 aaKnown RBP17.51■□□□□ 0.39
UPF1-206ENST00000598471 IVNS1ABPQ9Y6Y0 642 aa17.51■□□□□ 0.39
UPF1-206ENST00000598471 ADGRA2Q96PE1 1338 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 TRAK2O60296 914 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 EIF2AK2P19525 551 aaKnown RBP17.5■□□□□ 0.39
UPF1-206ENST00000598471 CCND2P30279 289 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 MAPK4P31152 587 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 SETQ01105 290 aaPredicted RBP17.5■□□□□ 0.39
UPF1-206ENST00000598471 TMEM266Q2M3C6 531 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 KLHL40Q2TBA0 621 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 POTEDQ86YR6 584 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 C4orf32Q8N8J7 132 aa17.5■□□□□ 0.39
UPF1-206ENST00000598471 ZNF579Q8NAF0 562 aaKnown RBP17.5■□□□□ 0.39
UPF1-206ENST00000598471 RNF186Q9NXI6 227 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms