RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 GCOM1H8Y6P7 765 aaPredicted RBP12.72□□□□□ -0.37
LIG3-214ENST00000592244 ADCY6O43306 1168 aa12.72□□□□□ -0.37
LIG3-214ENST00000592244 EIF3JO75822 258 aaKnown RBP12.72□□□□□ -0.37
LIG3-214ENST00000592244 POLR2MP0CAP2 368 aa12.72□□□□□ -0.37
LIG3-214ENST00000592244 TXNP10599 105 aaKnown RBP12.72□□□□□ -0.37
LIG3-214ENST00000592244 KCNV1Q6PIU1 500 aa12.72□□□□□ -0.37
LIG3-214ENST00000592244 CXCL17Q6UXB2 119 aa12.72□□□□□ -0.37
LIG3-214ENST00000592244 BADQ92934 168 aa12.72□□□□□ -0.37
LIG3-214ENST00000592244 LY9Q9HBG7 655 aa12.72□□□□□ -0.37
LIG3-214ENST00000592244 SH2B2O14492 632 aaPredicted RBP12.71□□□□□ -0.37
LIG3-214ENST00000592244 REC8O95072 547 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 SUPT20HL2P0C7V6 817 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 CDK7P50613 346 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 HSD17B4P51659 736 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 ANTXR2P58335 489 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 FGD1P98174 961 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 ITGA7Q13683 1181 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 CUL5Q93034 780 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 NEK1Q96PY6 1258 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 TAAR1Q96RJ0 339 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 PIGSQ96S52 555 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 SPZ1Q9BXG8 430 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 TAF6LQ9Y6J9 622 aa12.71□□□□□ -0.37
LIG3-214ENST00000592244 TRIM43BA6NCK2 446 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 CTAGE5O15320 804 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 TIMP1P01033 207 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 GH1P01241 217 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 NR3C2P08235 984 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 EIF2AK2P19525 551 aaKnown RBP12.7□□□□□ -0.38
LIG3-214ENST00000592244 GHRHRQ02643 423 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 FPGSQ05932 587 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 FAAP100Q0VG06 881 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 ERICH6BQ5W0A0 696 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 SEPT14Q6ZU15 432 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 TMEM199Q8N511 208 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 TRIM43Q96BQ3 446 aaPredicted RBP12.7□□□□□ -0.38
LIG3-214ENST00000592244 MTG1Q9BT17 334 aaPredicted RBP12.7□□□□□ -0.38
LIG3-214ENST00000592244 PXMP2Q9NR77 195 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 SMCHD1A6NHR9 2005 aa12.7□□□□□ -0.38
LIG3-214ENST00000592244 RANBP2P49792 3224 aaKnown RBP12.7□□□□□ -0.38
LIG3-214ENST00000592244 A6NJR5 290 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 CENPBP07199 599 aaPredicted RBP12.69□□□□□ -0.38
LIG3-214ENST00000592244 MYL3P08590 195 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 CCND2P30279 289 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 PPIGQ13427 754 aaKnown RBP eCLIP12.69□□□□□ -0.38
LIG3-214ENST00000592244 TSGA10IPQ3SY00 556 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 DHX32Q7L7V1 743 aaKnown RBP12.69□□□□□ -0.38
LIG3-214ENST00000592244 SH3RF1Q7Z6J0 888 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 FAM126BQ8IXS8 530 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 TBC1D5Q92609 795 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 SENP2Q9HC62 589 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 RBM28Q9NW13 759 aaKnown RBP12.69□□□□□ -0.38
LIG3-214ENST00000592244 TBX21Q9UL17 535 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 MRVI1Q9Y6F6 885 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 DDX49Q9Y6V7 483 aaKnown RBP12.69□□□□□ -0.38
LIG3-214ENST00000592244 DNAH12Q6ZR08 3092 aa12.69□□□□□ -0.38
LIG3-214ENST00000592244 ALPK3Q96L96 1907 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 CYTH3O43739 400 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 PPP1R11O60927 126 aaPredicted RBP12.68□□□□□ -0.38
LIG3-214ENST00000592244 STAM2O75886 525 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 TGFB3P10600 412 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 MYCLP12524 364 aaPredicted RBP12.68□□□□□ -0.38
LIG3-214ENST00000592244 CASTP20810 708 aaKnown RBP12.68□□□□□ -0.38
LIG3-214ENST00000592244 IRX5P78411 483 aaPredicted RBP12.68□□□□□ -0.38
LIG3-214ENST00000592244 PURAQ00577 322 aaKnown RBP12.68□□□□□ -0.38
LIG3-214ENST00000592244 LAMC2Q13753 1193 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 GNPTABQ3T906 1256 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 MFSD5Q6N075 450 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 SGMS1Q86VZ5 419 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 FCHSD1Q86WN1 690 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 FANCBQ8NB91 859 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 SLC43A3Q8NBI5 491 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 SMARCC2Q8TAQ2 1214 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 PIBF1Q8WXW3 757 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 PDCD2LQ9BRP1 358 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 MYL10Q9BUA6 226 aa12.68□□□□□ -0.38
LIG3-214ENST00000592244 MTIF3Q9H2K0 278 aaKnown RBP12.68□□□□□ -0.38
LIG3-214ENST00000592244 CCDC196A0A1B0GTZ2 297 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 ZBTB43O43298 467 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 PSMA5P28066 241 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 HOXA13P31271 388 aaPredicted RBP12.67□□□□□ -0.38
LIG3-214ENST00000592244 PTPN11Q06124 597 aaPredicted RBP12.67□□□□□ -0.38
LIG3-214ENST00000592244 DGKDQ16760 1214 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 FAM47CQ5HY64 1035 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 XRRA1Q6P2D8 792 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 NFRKBQ6P4R8 1299 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 CCDC62Q6P9F0 684 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 PPP4R3CPQ6ZMV5 832 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 VSIG10LQ86VR7 867 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 MICU3Q86XE3 530 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 TEX2Q8IWB9 1127 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 DHX37Q8IY37 1157 aaKnown RBP12.67□□□□□ -0.38
LIG3-214ENST00000592244 RNPC3Q96LT9 517 aaKnown RBP12.67□□□□□ -0.38
LIG3-214ENST00000592244 KATNAL1Q9BW62 490 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 HIPK3Q9H422 1215 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 EHMT1Q9H9B1 1298 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 COL20A1Q9P218 1284 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 NOD1Q9Y239 953 aa12.67□□□□□ -0.38
LIG3-214ENST00000592244 OPLAHO14841 1288 aa12.66□□□□□ -0.38
LIG3-214ENST00000592244 EPB41L2O43491 1005 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms