RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 GPCPD1Q9NPB8 672 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 BRWD1Q9NSI6 2320 aa25.71■■□□□ 1.71
SHMT1-210ENST00000583780 TANC1Q9C0D5 1861 aa25.7■■□□□ 1.71
SHMT1-210ENST00000583780 FRMPD2Q68DX3 1309 aaPredicted RBP25.7■■□□□ 1.71
SHMT1-210ENST00000583780 NKRFO15226 690 aaKnown RBP eCLIP25.7■■□□□ 1.7
SHMT1-210ENST00000583780 LPXNO60711 386 aa25.7■■□□□ 1.7
SHMT1-210ENST00000583780 RPS6P62753 249 aaKnown RBP25.7■■□□□ 1.7
SHMT1-210ENST00000583780 PTPN11Q06124 597 aaPredicted RBP25.7■■□□□ 1.7
SHMT1-210ENST00000583780 ALX1Q15699 326 aa25.7■■□□□ 1.7
SHMT1-210ENST00000583780 RETREG2Q8NC44 543 aa25.7■■□□□ 1.7
SHMT1-210ENST00000583780 ARNTL2Q8WYA1 636 aa25.7■■□□□ 1.7
SHMT1-210ENST00000583780 TCP11L1Q9NUJ3 509 aa25.7■■□□□ 1.7
SHMT1-210ENST00000583780 KPNA6O60684 536 aa25.69■■□□□ 1.7
SHMT1-210ENST00000583780 ARIH2O95376 493 aa25.69■■□□□ 1.7
SHMT1-210ENST00000583780 TOP1P11387 765 aaKnown RBP25.69■■□□□ 1.7
SHMT1-210ENST00000583780 CTAGE1Q96RT6 745 aa25.69■■□□□ 1.7
SHMT1-210ENST00000583780 COG5Q9UP83 839 aa25.69■■□□□ 1.7
SHMT1-210ENST00000583780 PCDHB15Q9Y5E8 787 aa25.69■■□□□ 1.7
SHMT1-210ENST00000583780 SCFD2Q8WU76 684 aa25.68■■□□□ 1.7
SHMT1-210ENST00000583780 FAM122AQ96E09 287 aa25.68■■□□□ 1.7
SHMT1-210ENST00000583780 FTOQ9C0B1 505 aaKnown RBP eCLIP25.68■■□□□ 1.7
SHMT1-210ENST00000583780 SALL3Q9BXA9 1300 aa25.67■■□□□ 1.7
SHMT1-210ENST00000583780 TXNP10599 105 aaKnown RBP25.67■■□□□ 1.7
SHMT1-210ENST00000583780 PDHBP11177 359 aa25.67■■□□□ 1.7
SHMT1-210ENST00000583780 PDE4DQ08499 809 aa25.67■■□□□ 1.7
SHMT1-210ENST00000583780 GRB10Q13322 594 aa25.67■■□□□ 1.7
SHMT1-210ENST00000583780 PPP2R5BQ15173 497 aa25.67■■□□□ 1.7
SHMT1-210ENST00000583780 BRDTQ58F21 947 aaPredicted RBP25.67■■□□□ 1.7
SHMT1-210ENST00000583780 DNERQ8NFT8 737 aa25.67■■□□□ 1.7
SHMT1-210ENST00000583780 KIF28PB7ZC32 967 aa25.66■■□□□ 1.7
SHMT1-210ENST00000583780 FGAP02671 866 aa25.66■■□□□ 1.7
SHMT1-210ENST00000583780 BFSP2Q13515 415 aa25.66■■□□□ 1.7
SHMT1-210ENST00000583780 CCDC62Q6P9F0 684 aa25.66■■□□□ 1.7
SHMT1-210ENST00000583780 LRFN3Q9BTN0 628 aa25.66■■□□□ 1.7
SHMT1-210ENST00000583780 MX1P20591 662 aa25.65■■□□□ 1.7
SHMT1-210ENST00000583780 HLA-CQ95604 372 aa25.65■■□□□ 1.7
SHMT1-210ENST00000583780 LCHNA4D1U4 455 aa25.64■■□□□ 1.7
SHMT1-210ENST00000583780 BAIAP3O94812 1187 aa25.64■■□□□ 1.7
SHMT1-210ENST00000583780 SNHG28P0DPA3 235 aa25.64■■□□□ 1.7
SHMT1-210ENST00000583780 ZNF543Q08ER8 600 aa25.64■■□□□ 1.7
SHMT1-210ENST00000583780 PTGISQ16647 500 aa25.64■■□□□ 1.7
SHMT1-210ENST00000583780 RRP12Q5JTH9 1297 aaKnown RBP25.64■■□□□ 1.7
SHMT1-210ENST00000583780 TMCO2Q7Z6W1 182 aaPredicted RBP25.64■■□□□ 1.7
SHMT1-210ENST00000583780 TBC1D5Q92609 795 aa25.64■■□□□ 1.7
SHMT1-210ENST00000583780 KHSRPQ92945 711 aaKnown RBP eCLIP25.64■■□□□ 1.7
SHMT1-210ENST00000583780 WDR19Q8NEZ3 1342 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 RAD50Q92878 1312 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 KIAA1217Q5T5P2 1943 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 RBAK-RBAKDNI3L0D1 243 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 GDF6Q6KF10 455 aaPredicted RBP25.63■■□□□ 1.69
SHMT1-210ENST00000583780 RGS22Q8NE09 1264 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 KAT2BQ92831 832 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 TTC14Q96N46 770 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 HELLSQ9NRZ9 838 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 TOMM22Q9NS69 142 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 PNMA2Q9UL42 364 aa25.63■■□□□ 1.69
SHMT1-210ENST00000583780 WDR5P61964 334 aaKnown RBP25.62■■□□□ 1.69
SHMT1-210ENST00000583780 TCTN1Q2MV58 587 aa25.62■■□□□ 1.69
SHMT1-210ENST00000583780 SESTD1Q86VW0 696 aa25.62■■□□□ 1.69
SHMT1-210ENST00000583780 AFG1LQ8WV93 481 aa25.62■■□□□ 1.69
SHMT1-210ENST00000583780 DHX38Q92620 1227 aaKnown RBP25.62■■□□□ 1.69
SHMT1-210ENST00000583780 MYH7BA7E2Y1 1941 aa25.61■■□□□ 1.69
SHMT1-210ENST00000583780 HOXD11P31277 338 aaPredicted RBP25.61■■□□□ 1.69
SHMT1-210ENST00000583780 CAGE1Q8TC20 777 aa25.61■■□□□ 1.69
SHMT1-210ENST00000583780 AFAP1L1Q8TED9 768 aa25.61■■□□□ 1.69
SHMT1-210ENST00000583780 EVI5LQ96CN4 794 aa25.61■■□□□ 1.69
SHMT1-210ENST00000583780 MPHOSPH6Q99547 160 aaKnown RBP25.61■■□□□ 1.69
SHMT1-210ENST00000583780 NOD1Q9Y239 953 aa25.61■■□□□ 1.69
SHMT1-210ENST00000583780 CHMP4BP1P59074 171 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 DEFB103AP81534 67 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 ARHGAP1Q07960 439 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 LY6KQ17RY6 165 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 FAM227BQ96M60 508 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 TAAR1Q96RJ0 339 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 CPVLQ9H3G5 476 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 CD320Q9NPF0 282 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 C11orf16Q9NQ32 467 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 LMCD1Q9NZU5 365 aa25.6■■□□□ 1.69
SHMT1-210ENST00000583780 ARIH1Q9Y4X5 557 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-210ENST00000583780 COL4A4P53420 1690 aaPredicted RBP25.6■■□□□ 1.69
SHMT1-210ENST00000583780 NBNO60934 754 aa25.59■■□□□ 1.69
SHMT1-210ENST00000583780 CXCL10P02778 98 aa25.59■■□□□ 1.69
SHMT1-210ENST00000583780 MMP3P08254 477 aa25.59■■□□□ 1.69
SHMT1-210ENST00000583780 HSPD1P10809 573 aaKnown RBP25.59■■□□□ 1.69
SHMT1-210ENST00000583780 A0A0D9SFI3 127 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 B4DLN1 442 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 GOLGA8HP0CJ92 632 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 SELPP16109 830 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 KCNJ6P48051 423 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 MRPL12P52815 198 aaKnown RBP25.58■■□□□ 1.69
SHMT1-210ENST00000583780 RBL2Q08999 1139 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 USH1GQ495M9 461 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 MCMDC2Q4G0Z9 681 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 UBA5Q9GZZ9 404 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 SUGCTQ9HAC7 445 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 COL20A1Q9P218 1284 aa25.58■■□□□ 1.69
SHMT1-210ENST00000583780 HAND2P61296 217 aa25.57■■□□□ 1.68
SHMT1-210ENST00000583780 SEPT14Q6ZU15 432 aa25.57■■□□□ 1.68
SHMT1-210ENST00000583780 LRRC8DQ7L1W4 858 aa25.57■■□□□ 1.68
SHMT1-210ENST00000583780 SYTL5Q8TDW5 730 aaPredicted RBP25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms