RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CDK7P50613 346 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 ANTXR2P58335 489 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 MRPS5P82675 430 aaKnown RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 SCRN1Q12765 414 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 ADGRE1Q14246 886 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 CSPP1Q1MSJ5 1256 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 CCDC144BQ3MJ40 725 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 MCTP1Q6DN14 999 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 CCSAPQ6IQ19 270 aaPredicted RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 CYB5R4Q7L1T6 521 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 ANKRD35Q8N283 1001 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 PCSK9Q8NBP7 692 aaKnown RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 REPS2Q8NFH8 660 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 KIFC2Q96AC6 838 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 UHRF1Q96T88 793 aaPredicted RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 SLF1Q9BQI6 1058 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 TEX13BQ9BXU2 312 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 MKNK2Q9HBH9 465 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 RAVER2Q9HCJ3 691 aaKnown RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 ISY1Q9ULR0 285 aaKnown RBP11.74□□□□□ -0.53
SS18-210ENST00000578700 MROH7Q68CQ1 1323 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 GBF1Q92538 1859 aa11.74□□□□□ -0.53
SS18-210ENST00000578700 CCDC196A0A1B0GTZ2 297 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 PTPDC1A2A3K4 754 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 ZBTB43O43298 467 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 ORC4O43929 436 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 ELP1O95163 1332 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 FGBP02675 491 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 METAP2P50579 478 aaKnown RBP eCLIP11.73□□□□□ -0.53
SS18-210ENST00000578700 CCL23P55773 120 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 CCT2P78371 535 aaKnown RBP11.73□□□□□ -0.53
SS18-210ENST00000578700 BEX3Q00994 111 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 PKP1Q13835 747 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 FOXD4L5Q5VV16 416 aaPredicted RBP11.73□□□□□ -0.53
SS18-210ENST00000578700 PSRC1Q6PGN9 363 aaPredicted RBP11.73□□□□□ -0.53
SS18-210ENST00000578700 OTOP2Q7RTS6 562 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 SGMS1Q86VZ5 419 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 MSL3Q8N5Y2 521 aaKnown RBP11.73□□□□□ -0.53
SS18-210ENST00000578700 FOXD4L4Q8WXT5 416 aaPredicted RBP11.73□□□□□ -0.53
SS18-210ENST00000578700 SYNGAP1Q96PV0 1343 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 SLC28A3Q9HAS3 691 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 ZSWIM5Q9P217 1185 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 CLIP2Q9UDT6 1046 aa11.73□□□□□ -0.53
SS18-210ENST00000578700 GOLGA8AA7E2F4 631 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 F5H6K3 240 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 ADCY6O43306 1168 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 NDUFB10O96000 172 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 RABGGTBP53611 331 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 RCAN1P53805 252 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 GJA9P57773 515 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 KLRC3Q07444 240 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 COL9A3Q14050 684 aaPredicted RBP11.72□□□□□ -0.53
SS18-210ENST00000578700 PPP2R5BQ15173 497 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 SKIV2LQ15477 1246 aaKnown RBP11.72□□□□□ -0.53
SS18-210ENST00000578700 RAB30Q15771 203 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 MAMDC4Q6UXC1 1216 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 FAM126BQ8IXS8 530 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 PRPF38AQ8NAV1 312 aaKnown RBP11.72□□□□□ -0.53
SS18-210ENST00000578700 IGDCC4Q8TDY8 1250 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 ZSCAN10Q96SZ4 725 aaPredicted RBP11.72□□□□□ -0.53
SS18-210ENST00000578700 MTIF3Q9H2K0 278 aaKnown RBP11.72□□□□□ -0.53
SS18-210ENST00000578700 ABHD16BQ9H3Z7 469 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 IL23AQ9NPF7 189 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 HOMER2Q9NSB8 354 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 CXXC1Q9P0U4 656 aaPredicted RBP11.72□□□□□ -0.53
SS18-210ENST00000578700 BRPF3Q9ULD4 1205 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 ZDHHC9Q9Y397 364 aa11.72□□□□□ -0.53
SS18-210ENST00000578700 DNAJC25-GNG10A0A024R161 153 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.71□□□□□ -0.53
SS18-210ENST00000578700 TSPY2A6NKD2 308 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 ZBBXA8MT70 800 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 F13A1P00488 732 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 FGRP09769 529 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 CALM1P0DP23 149 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 CALM2P0DP24 149 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 CALM3P0DP25 149 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 ST3GAL1Q11201 340 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 APOA5Q6Q788 366 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 CXCL17Q6UXB2 119 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 ARMCX2Q7L311 632 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 CATIPQ7Z7H3 387 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 ZNF444Q8N0Y2 327 aaPredicted RBP11.71□□□□□ -0.53
SS18-210ENST00000578700 SMARCC2Q8TAQ2 1214 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 HERVK_113Q902F9 699 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 WASF1Q92558 559 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 NECAB3Q96P71 396 aaPredicted RBP11.71□□□□□ -0.53
SS18-210ENST00000578700 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.71□□□□□ -0.53
SS18-210ENST00000578700 TSPYL2Q9H2G4 693 aaPredicted RBP11.71□□□□□ -0.53
SS18-210ENST00000578700 HIPK3Q9H422 1215 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 LY9Q9HBG7 655 aa11.71□□□□□ -0.53
SS18-210ENST00000578700 YBX2Q9Y2T7 364 aaKnown RBP11.71□□□□□ -0.53
SS18-210ENST00000578700 LAMA4Q16363 1823 aa11.71□□□□□ -0.54
SS18-210ENST00000578700 MYH4Q9Y623 1939 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 TNKSO95271 1327 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 UMODL1Q5DID0 1318 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 DYNC1LI2O43237 492 aaPredicted RBP11.7□□□□□ -0.54
SS18-210ENST00000578700 TRAK2O60296 914 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 JAK2O60674 1132 aa11.7□□□□□ -0.54
SS18-210ENST00000578700 MYOGP15173 224 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms