RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 FOSL2P15408 326 aa17.38■□□□□ 0.37
CLN3-222ENST00000566083 STXBP2Q15833 593 aa17.38■□□□□ 0.37
CLN3-222ENST00000566083 QRICH1Q2TAL8 776 aa17.38■□□□□ 0.37
CLN3-222ENST00000566083 NFRKBQ6P4R8 1299 aa17.38■□□□□ 0.37
CLN3-222ENST00000566083 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.38■□□□□ 0.37
CLN3-222ENST00000566083 TIFAQ96CG3 184 aa17.38■□□□□ 0.37
CLN3-222ENST00000566083 NOC4LQ9BVI4 516 aaKnown RBP17.38■□□□□ 0.37
CLN3-222ENST00000566083 AMNQ9BXJ7 453 aa17.38■□□□□ 0.37
CLN3-222ENST00000566083 PSMC6P62333 389 aa17.37■□□□□ 0.37
CLN3-222ENST00000566083 SART3Q15020 963 aaKnown RBP17.37■□□□□ 0.37
CLN3-222ENST00000566083 RAB30Q15771 203 aa17.37■□□□□ 0.37
CLN3-222ENST00000566083 MAFAQ8NHW3 353 aaPredicted RBP17.37■□□□□ 0.37
CLN3-222ENST00000566083 SYTL5Q8TDW5 730 aaPredicted RBP17.37■□□□□ 0.37
CLN3-222ENST00000566083 TRPV6Q9H1D0 765 aa17.37■□□□□ 0.37
CLN3-222ENST00000566083 ZNF576Q9H609 170 aa17.37■□□□□ 0.37
CLN3-222ENST00000566083 JMJD4Q9H9V9 463 aa17.37■□□□□ 0.37
CLN3-222ENST00000566083 MSRAQ9UJ68 235 aa17.37■□□□□ 0.37
CLN3-222ENST00000566083 LAMA2P24043 3122 aaKnown RBP17.36■□□□□ 0.37
CLN3-222ENST00000566083 ACRP10323 421 aa17.36■□□□□ 0.37
CLN3-222ENST00000566083 TMEM63BQ5T3F8 832 aa17.36■□□□□ 0.37
CLN3-222ENST00000566083 RALYLQ86SE5 291 aaKnown RBP17.36■□□□□ 0.37
CLN3-222ENST00000566083 RMDN3Q96TC7 470 aa17.36■□□□□ 0.37
CLN3-222ENST00000566083 VAT1LQ9HCJ6 419 aa17.36■□□□□ 0.37
CLN3-222ENST00000566083 KLRF2D3W0D1 207 aa17.35■□□□□ 0.37
CLN3-222ENST00000566083 EIF3JO75822 258 aaKnown RBP17.35■□□□□ 0.37
CLN3-222ENST00000566083 GH1P01241 217 aa17.35■□□□□ 0.37
CLN3-222ENST00000566083 SEC23AQ15436 765 aa17.35■□□□□ 0.37
CLN3-222ENST00000566083 ARHGEF16Q5VV41 709 aa17.35■□□□□ 0.37
CLN3-222ENST00000566083 MYLIPQ8WY64 445 aa17.35■□□□□ 0.37
CLN3-222ENST00000566083 CPVLQ9H3G5 476 aa17.35■□□□□ 0.37
CLN3-222ENST00000566083 A0A0C4DFX4 3053 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 ZBTB5O15062 677 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 GSPT1P15170 499 aaKnown RBP17.34■□□□□ 0.37
CLN3-222ENST00000566083 PTGS1P23219 599 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 CHMLP26374 656 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 RFC2P35250 354 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 GHRHRQ02643 423 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 NBPF20Q3BBV1 942 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 FAM47CQ5HY64 1035 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 CCDC62Q6P9F0 684 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 KCNV1Q6PIU1 500 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 RETREG2Q8NC44 543 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 NCOA7Q8NI08 942 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 SCN10AQ9Y5Y9 1956 aa17.34■□□□□ 0.37
CLN3-222ENST00000566083 MYH6P13533 1939 aa17.33■□□□□ 0.37
CLN3-222ENST00000566083 PITPNM1O00562 1244 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 CFBP00751 764 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 ACTN1P12814 892 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 CASTP20810 708 aaKnown RBP17.33■□□□□ 0.36
CLN3-222ENST00000566083 PDE4AP27815 886 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 CCL23P55773 120 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 BFSP2Q13515 415 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 SEPT14Q6ZU15 432 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 MTMR8Q96EF0 704 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 TAAR1Q96RJ0 339 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 GAS2L1Q99501 681 aaPredicted RBP17.33■□□□□ 0.36
CLN3-222ENST00000566083 PBX4Q9BYU1 374 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 NOD1Q9Y239 953 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 PCDHA1Q9Y5I3 950 aa17.33■□□□□ 0.36
CLN3-222ENST00000566083 PALM3A6NDB9 673 aaPredicted RBP17.32■□□□□ 0.36
CLN3-222ENST00000566083 IFIT3O14879 490 aaKnown RBP17.32■□□□□ 0.36
CLN3-222ENST00000566083 HSD17B4P51659 736 aa17.32■□□□□ 0.36
CLN3-222ENST00000566083 CCDC155Q8N6L0 562 aa17.32■□□□□ 0.36
CLN3-222ENST00000566083 TBC1D5Q92609 795 aa17.32■□□□□ 0.36
CLN3-222ENST00000566083 EMID1Q96A84 441 aaPredicted RBP17.32■□□□□ 0.36
CLN3-222ENST00000566083 WNT8AQ9H1J5 351 aa17.32■□□□□ 0.36
CLN3-222ENST00000566083 TRMT13Q9NUP7 481 aaKnown RBP17.32■□□□□ 0.36
CLN3-222ENST00000566083 MAD2L2Q9UI95 211 aa17.32■□□□□ 0.36
CLN3-222ENST00000566083 SLC4A7Q9Y6M7 1214 aa17.32■□□□□ 0.36
CLN3-222ENST00000566083 UMODL1Q5DID0 1318 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 NR3C2P08235 984 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 CYP21A2P08686 494 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 LAMC2Q13753 1193 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 GRIN2CQ14957 1233 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 WTAPQ15007 396 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 DGKDQ16760 1214 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 OTOP2Q7RTS6 562 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 SESTD1Q86VW0 696 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 STAG2Q8N3U4 1231 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 COPS5Q92905 334 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 MTA3Q9BTC8 594 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 KATNAL1Q9BW62 490 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 IL25Q9H293 177 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 SLC28A3Q9HAS3 691 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 PXMP2Q9NR77 195 aa17.31■□□□□ 0.36
CLN3-222ENST00000566083 SGSM2O43147 1006 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 ARIH2O95376 493 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 PARNO95453 639 aaKnown RBP17.3■□□□□ 0.36
CLN3-222ENST00000566083 TGFB3P10600 412 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 GRM4Q14833 912 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 STOX1Q6ZVD7 989 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 CYB5R4Q7L1T6 521 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 CATIPQ7Z7H3 387 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 CAGE1Q8TC20 777 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 AFG1LQ8WV93 481 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 RIOX1Q9H6W3 641 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 COL20A1Q9P218 1284 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 DDX41Q9UJV9 622 aaKnown RBP17.3■□□□□ 0.36
CLN3-222ENST00000566083 MRVI1Q9Y6F6 885 aa17.3■□□□□ 0.36
CLN3-222ENST00000566083 E7EWF7 191 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms