RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 MCM7P33993 719 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 ME1P48163 572 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 TOB1P50616 345 aaPredicted RBP14.57□□□□□ -0.08
CLK3-214ENST00000564096 USP11P51784 963 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 SLC39A14Q15043 492 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 NOM1Q5C9Z4 860 aaKnown RBP14.57□□□□□ -0.08
CLK3-214ENST00000564096 LINC00301Q8NCQ3 95 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 MMP19Q99542 508 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 GDPD2Q9HCC8 539 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 CYP39A1Q9NYL5 469 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 TFIP11Q9UBB9 837 aaKnown RBP14.57□□□□□ -0.08
CLK3-214ENST00000564096 PCDHB6Q9Y5E3 794 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 CLIC4Q9Y696 253 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 FRMPD4Q14CM0 1322 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 ADGRA2Q96PE1 1338 aa14.57□□□□□ -0.08
CLK3-214ENST00000564096 ADAMTS3O15072 1205 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 TLR2O60603 784 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 PPP6R2O75170 966 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 FCER1AP12319 257 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 ZNF76P36508 570 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 SETQ01105 290 aaPredicted RBP14.56□□□□□ -0.08
CLK3-214ENST00000564096 BAATQ14032 418 aaPredicted RBP14.56□□□□□ -0.08
CLK3-214ENST00000564096 NBR1Q14596 966 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 NFKBIBQ15653 356 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 ARHGEF16Q5VV41 709 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 PPP4R3AQ6IN85 833 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 XRRA1Q6P2D8 792 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 NSUN6Q8TEA1 469 aaKnown RBP14.56□□□□□ -0.08
CLK3-214ENST00000564096 CHAMP1Q96JM3 812 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 ADD3Q9UEY8 706 aaKnown RBP14.56□□□□□ -0.08
CLK3-214ENST00000564096 RCOR1Q9UKL0 485 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 RPTORQ8N122 1335 aa14.56□□□□□ -0.08
CLK3-214ENST00000564096 THSD7BQ9C0I4 1608 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 POTEB2H3BUK9 544 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 CA12O43570 354 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 MBD3O95983 291 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 CYP3A4P08684 503 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 MAP2K2P36507 400 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 UBE2HP62256 183 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 ATP2C1P98194 919 aaPredicted RBP14.55□□□□□ -0.08
CLK3-214ENST00000564096 ZNF174Q15697 407 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 POTEEQ6S8J3 1075 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 ABRAQ8N0Z2 381 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 KRI1Q8N9T8 703 aaKnown RBP14.55□□□□□ -0.08
CLK3-214ENST00000564096 DNERQ8NFT8 737 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 FERMT2Q96AC1 680 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 RMDN3Q96TC7 470 aa14.55□□□□□ -0.08
CLK3-214ENST00000564096 DDX25Q9UHL0 483 aaKnown RBP14.55□□□□□ -0.08
CLK3-214ENST00000564096 MARCH6O60337 910 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 AOC2O75106 756 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 PRPF40AO75400 957 aaKnown RBP14.54□□□□□ -0.08
CLK3-214ENST00000564096 OR52Z1P0C646 297 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 BCRP11274 1271 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 CCND2P30279 289 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 PRPHP41219 470 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 CRHR2Q13324 411 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 PTPAQ15257 358 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 CALCRLQ16602 461 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 TMEM266Q2M3C6 531 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 PCNX4Q63HM2 1172 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 ARL6IP4Q66PJ3 421 aaKnown RBP14.54□□□□□ -0.08
CLK3-214ENST00000564096 TBC1D5Q92609 795 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 PXMP2Q9NR77 195 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 COL20A1Q9P218 1284 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 CPA4Q9UI42 421 aa14.54□□□□□ -0.08
CLK3-214ENST00000564096 CYP3A7-CYP3A51PA0A087WV96 503 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 LOC102724159A0A0B4J2E5 919 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 STRNO43815 780 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 PEX10O60683 326 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 CUTAO60888 179 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 STAM2O75886 525 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 TDP2O95551 362 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 EIF2AK2P19525 551 aaKnown RBP14.53□□□□□ -0.08
CLK3-214ENST00000564096 CYP3A7P24462 503 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 CIITAP33076 1130 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 PTGDRQ13258 359 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 PGM5Q15124 567 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 PWP2Q15269 919 aaKnown RBP14.53□□□□□ -0.08
CLK3-214ENST00000564096 Q3C1V9 767 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 CRYGNQ8WXF5 182 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 PDCD2LQ9BRP1 358 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 RAB34Q9BZG1 259 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 PORCNQ9H237 461 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 EFCC1Q9HA90 598 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 SLC5A4Q9NY91 659 aa14.53□□□□□ -0.08
CLK3-214ENST00000564096 A0A1W2PQ27 194 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 A0A1W2PQ64 194 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 A0A1W2PQD8 194 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 TBX3O15119 743 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 HSPA6P17066 643 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 MARCKSP29966 332 aaPredicted RBP14.52□□□□□ -0.09
CLK3-214ENST00000564096 SKOR2Q2VWA4 1001 aaPredicted RBP14.52□□□□□ -0.09
CLK3-214ENST00000564096 Q4G0T1 1027 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 CEP55Q53EZ4 464 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 C17orf99Q6UX52 265 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 CCDC73Q6ZRK6 1079 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 NIPA1Q7RTP0 329 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 GPR142Q7Z601 462 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 PLEKHH3Q7Z736 793 aa14.52□□□□□ -0.09
CLK3-214ENST00000564096 POTEDQ86YR6 584 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms